Analysis of interatomic Contacts of Structural Units in PDB entry:
3B3J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3B3J entry

There is 1 chain in PDB entry 3B3J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 147THR 478
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3B3J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
154 156Right-handed 310
Helix 2
2
A
158 180Right-handed alpha
Helix 3
3
A
181 184Right-handed 310
Helix 4
4
A
197 206Right-handed alpha
Helix 5
5
A
216 230Right-handed alpha
Helix 6
6
A
260 265Right-handed alpha
Helix 7
7
A
266 276Right-handed alpha
Helix 8
8
A
300 316Right-handed alpha
Helix 9
9
A
324 326Right-handed 310
Helix 10
10
A
327 336Right-handed alpha
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There are 5 sheets in PDB entry 3B3J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 152first strand
Strand 2
A
474 477anti-parallel
Strand 3
A
340 341parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 240first strand
Strand 2
A
210 215parallel
Strand 3
A
188 192parallel
Strand 4
A
252 256parallel
Strand 5
A
280 287parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 359first strand
Strand 2
A
290 298anti-parallel
Strand 3
A
383 397anti-parallel
Strand 4
A
402 404anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 359first strand
Strand 2
A
290 298anti-parallel
Strand 3
A
383 397anti-parallel
Strand 4
A
417 429anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 378first strand
Strand 2
A
434 443anti-parallel
Strand 3
A
449 457anti-parallel
Strand 4
A
463 469anti-parallel
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