Analysis of interatomic Contacts of Structural Units in PDB entry:
3B59

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3B59 entry

There are 6 chains in PDB entry 3B59 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 3	GLU 303
B	LEU 3	GLU 303
C	LEU 3	GLU 303
D	LEU 3	GLU 303
E	LEU 3	GLU 303
F	LEU 3	GLU 303

There are 37 helices in PDB entry 3B59. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	18	29	Right-handed alpha
Helix 2	2	A	74	89	Right-handed alpha
Helix 3	3	A	151	162	Right-handed alpha
Helix 4	4	A	205	219	Right-handed alpha
Helix 5	5	A	270	275	Right-handed alpha
Helix 6	6	A	283	287	Right-handed 310
Helix 7	7	B	18	29	Right-handed alpha
Helix 8	8	B	74	88	Right-handed alpha
Helix 9	9	B	151	162	Right-handed alpha
Helix 10	10	B	205	218	Right-handed alpha
Helix 11	11	B	270	275	Right-handed alpha
Helix 12	12	B	283	287	Right-handed 310
Helix 13	13	C	18	29	Right-handed alpha
Helix 14	14	C	74	88	Right-handed alpha
Helix 15	15	C	151	162	Right-handed alpha
Helix 16	16	C	205	219	Right-handed alpha
Helix 17	17	C	270	275	Right-handed alpha
Helix 18	18	D	18	29	Right-handed alpha
Helix 19	19	D	74	89	Right-handed alpha
Helix 20	20	D	151	162	Right-handed alpha
Helix 21	21	D	205	218	Right-handed alpha
Helix 22	22	D	270	275	Right-handed alpha
Helix 23	23	D	283	287	Right-handed 310
Helix 24	24	D	299	303	Right-handed 310
Helix 25	25	E	18	29	Right-handed alpha
Helix 26	26	E	74	87	Right-handed alpha
Helix 27	27	E	151	162	Right-handed alpha
Helix 28	28	E	205	219	Right-handed alpha
Helix 29	29	E	270	275	Right-handed alpha
Helix 30	30	E	283	287	Right-handed 310
Helix 31	31	E	299	303	Right-handed 310
Helix 32	32	F	18	29	Right-handed alpha
Helix 33	33	F	74	88	Right-handed alpha
Helix 34	34	F	151	162	Right-handed alpha
Helix 35	35	F	205	219	Right-handed alpha
Helix 36	36	F	270	275	Right-handed alpha
Helix 37	37	F	283	287	Right-handed 310

There are 13 sheets in PDB entry 3B59. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	37	first strand
Strand 2	A	41	45	anti-parallel
Strand 3	A	55	59	anti-parallel
Strand 4	A	8	16	parallel
Strand 5	A	64	71	anti-parallel
Strand 6	A	117	122	parallel
Strand 7	A	106	111	anti-parallel
Strand 8	A	97	98	anti-parallel

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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	229	first strand
Strand 2	A	236	241	anti-parallel
Strand 3	A	247	252	anti-parallel
Strand 4	A	195	202	parallel
Strand 5	A	141	149	anti-parallel
Strand 6	A	187	191	parallel
Strand 7	A	175	179	anti-parallel
Strand 8	A	166	171	anti-parallel
Strand 9	A	266	267	parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	38	first strand
Strand 2	B	41	45	anti-parallel
Strand 3	B	55	59	anti-parallel
Strand 4	B	6	16	parallel
Strand 5	B	64	72	anti-parallel
Strand 6	B	117	122	parallel
Strand 7	B	106	111	anti-parallel
Strand 8	B	91	92	anti-parallel

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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	38	first strand
Strand 2	B	41	45	anti-parallel
Strand 3	B	55	59	anti-parallel
Strand 4	B	6	16	parallel
Strand 5	B	64	72	anti-parallel
Strand 6	B	117	122	parallel
Strand 7	B	106	111	anti-parallel
Strand 8	B	97	98	anti-parallel

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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	229	first strand
Strand 2	B	236	241	anti-parallel
Strand 3	B	247	252	anti-parallel
Strand 4	B	195	202	parallel
Strand 5	B	141	149	anti-parallel
Strand 6	B	187	191	parallel
Strand 7	B	175	179	anti-parallel
Strand 8	B	166	171	anti-parallel
Strand 9	B	265	267	parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	37	first strand
Strand 2	C	41	45	anti-parallel
Strand 3	C	55	59	anti-parallel
Strand 4	C	8	16	parallel
Strand 5	C	64	71	anti-parallel
Strand 6	C	117	122	parallel
Strand 7	C	106	111	anti-parallel
Strand 8	C	92	98	anti-parallel

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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	229	first strand
Strand 2	C	236	241	anti-parallel
Strand 3	C	247	252	anti-parallel
Strand 4	C	195	202	parallel
Strand 5	C	141	149	anti-parallel
Strand 6	C	187	191	parallel
Strand 7	C	175	179	anti-parallel
Strand 8	C	166	171	anti-parallel
Strand 9	C	265	267	parallel

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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	37	first strand
Strand 2	D	41	45	anti-parallel
Strand 3	D	55	59	anti-parallel
Strand 4	D	6	16	parallel
Strand 5	D	64	72	anti-parallel
Strand 6	D	117	122	parallel
Strand 7	D	106	111	anti-parallel
Strand 8	D	97	98	anti-parallel

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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	225	229	first strand
Strand 2	D	236	241	anti-parallel
Strand 3	D	247	252	anti-parallel
Strand 4	D	195	202	parallel
Strand 5	D	141	149	anti-parallel
Strand 6	D	187	191	parallel
Strand 7	D	175	179	anti-parallel
Strand 8	D	166	171	anti-parallel
Strand 9	D	266	267	parallel

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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	36	first strand
Strand 2	E	41	45	anti-parallel
Strand 3	E	55	59	anti-parallel
Strand 4	E	8	16	parallel
Strand 5	E	64	71	anti-parallel
Strand 6	E	117	122	parallel
Strand 7	E	106	111	anti-parallel
Strand 8	E	92	98	anti-parallel

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There are 9 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	225	229	first strand
Strand 2	E	236	241	anti-parallel
Strand 3	E	247	251	anti-parallel
Strand 4	E	195	202	parallel
Strand 5	E	141	149	anti-parallel
Strand 6	E	187	191	parallel
Strand 7	E	175	179	anti-parallel
Strand 8	E	166	171	anti-parallel
Strand 9	E	265	267	parallel

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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	33	38	first strand
Strand 2	F	41	45	anti-parallel
Strand 3	F	55	59	anti-parallel
Strand 4	F	8	16	parallel
Strand 5	F	64	71	anti-parallel
Strand 6	F	117	122	parallel
Strand 7	F	106	111	anti-parallel
Strand 8	F	97	98	anti-parallel

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There are 9 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	225	229	first strand
Strand 2	F	236	241	anti-parallel
Strand 3	F	247	252	anti-parallel
Strand 4	F	195	202	parallel
Strand 5	F	141	149	anti-parallel
Strand 6	F	187	191	parallel
Strand 7	F	175	179	anti-parallel
Strand 8	F	166	171	anti-parallel
Strand 9	F	265	267	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3B59

Analysis of interatomic Contacts of Structural Units in PDB entry:
3B59