Analysis of interatomic Contacts of Structural Units in PDB entry:
3B5E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3B5E entry

There are 2 chains in PDB entry 3B5E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 7PRO 215
B
 GLY 3PRO 215
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 3B5E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 53Right-handed alpha
Helix 2
2
A
83 106Right-handed alpha
Helix 3
3
A
108 110Right-handed 310
Helix 4
4
A
118 131Right-handed alpha
Helix 5
5
A
171 173Right-handed 310
Helix 6
6
A
174 185Right-handed alpha
Helix 7
7
A
201 214Right-handed alpha
Helix 8
8
B
45 53Right-handed alpha
Helix 9
9
B
83 106Right-handed alpha
Helix 10
10
B
108 110Right-handed 310
Helix 11
11
B
118 131Right-handed alpha
Helix 12
12
B
171 173Right-handed 310
Helix 13
13
B
174 185Right-handed alpha
Helix 14
14
B
201 214Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3B5E. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 22first strand
Strand 2
A
57 61anti-parallel
Strand 3
A
31 35parallel
Strand 4
A
112 117parallel
Strand 5
A
137 141parallel
Strand 6
A
159 165parallel
Strand 7
A
188 194parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
70 72anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 78first strand
Strand 2
A
81 82anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 22first strand
Strand 2
B
57 61anti-parallel
Strand 3
B
31 35parallel
Strand 4
B
112 117parallel
Strand 5
B
137 141parallel
Strand 6
B
159 165parallel
Strand 7
B
188 194parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 67first strand
Strand 2
B
70 72anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 78first strand
Strand 2
B
81 82anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il