Analysis of interatomic Contacts of Structural Units in PDB entry:
3B5M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3B5M entry

There are 4 chains in PDB entry 3B5M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0SER 193
B
 SER 0ILE 194
C
 SER 0GLU 191
D
 SER 0ILE 194
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3B5M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 55Right-handed alpha
Helix 2
2
A
64 74Right-handed alpha
Helix 3
3
A
135 149Right-handed alpha
Helix 4
4
A
155 174Right-handed alpha
Helix 5
5
A
175 192Right-handed alpha
Helix 6
6
B
45 55Right-handed alpha
Helix 7
7
B
64 74Right-handed alpha
Helix 8
8
B
135 149Right-handed alpha
Helix 9
9
B
155 174Right-handed alpha
Helix 10
10
B
175 194Right-handed alpha
Helix 11
11
C
45 55Right-handed alpha
Helix 12
12
C
64 74Right-handed alpha
Helix 13
13
C
135 149Right-handed alpha
Helix 14
14
C
155 174Right-handed alpha
Helix 15
15
C
175 191Right-handed alpha
Helix 16
16
D
45 55Right-handed alpha
Helix 17
17
D
64 74Right-handed alpha
Helix 18
18
D
135 149Right-handed alpha
Helix 19
19
D
155 174Right-handed alpha
Helix 20
20
D
175 194Right-handed alpha
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There are 8 sheets in PDB entry 3B5M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 21first strand
Strand 2
A
5 10anti-parallel
Strand 3
A
56 61anti-parallel
Strand 4
A
100 110anti-parallel
Strand 5
A
117 127anti-parallel
Strand 6
A
36 39anti-parallel
Strand 7
A
24 26anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
93 95anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 21first strand
Strand 2
B
5 10anti-parallel
Strand 3
B
56 61anti-parallel
Strand 4
B
100 110anti-parallel
Strand 5
B
117 127anti-parallel
Strand 6
B
36 39anti-parallel
Strand 7
B
24 26anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 84first strand
Strand 2
B
93 95anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 21first strand
Strand 2
C
5 10anti-parallel
Strand 3
C
56 61anti-parallel
Strand 4
C
100 110anti-parallel
Strand 5
C
117 127anti-parallel
Strand 6
C
36 39anti-parallel
Strand 7
C
24 26anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
82 84first strand
Strand 2
C
93 95anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
16 21first strand
Strand 2
D
5 10anti-parallel
Strand 3
D
56 61anti-parallel
Strand 4
D
100 110anti-parallel
Strand 5
D
117 127anti-parallel
Strand 6
D
36 39anti-parallel
Strand 7
D
24 26anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
82 84first strand
Strand 2
D
93 95anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il