Analysis of interatomic Contacts of Structural Units in PDB entry:
3B5Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3B5Q entry

There are 2 chains in PDB entry 3B5Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 14ILE 477
B
 GLU 14ARG 480
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 3B5Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 35Right-handed 310
Helix 2
2
A
41 50Right-handed alpha
Helix 3
3
A
63 74Right-handed alpha
Helix 4
4
A
76 81Right-handed alpha
Helix 5
5
A
100 108Right-handed alpha
Helix 6
6
A
145 163Right-handed alpha
Helix 7
7
A
181 189Right-handed alpha
Helix 8
8
A
213 217Right-handed 310
Helix 9
9
A
218 223Right-handed alpha
Helix 10
10
A
223 228Right-handed alpha
Helix 11
11
A
228 235Right-handed alpha
Helix 12
12
A
238 268Right-handed alpha
Helix 13
13
A
272 274Right-handed 310
Helix 14
14
A
289 293Right-handed 310
Helix 15
15
A
301 306Right-handed alpha
Helix 16
16
A
329 343Right-handed alpha
Helix 17
17
A
355 360Right-handed alpha
Helix 18
18
A
423 425Right-handed 310
Helix 19
19
A
426 445Right-handed alpha
Helix 20
20
A
447 451Right-handed 310
Helix 21
21
A
456 460Right-handed 310
Helix 22
22
A
465 469Right-handed 310
Helix 23
23
B
31 35Right-handed 310
Helix 24
24
B
41 51Right-handed alpha
Helix 25
25
B
63 74Right-handed alpha
Helix 26
26
B
76 81Right-handed alpha
Helix 27
27
B
100 108Right-handed alpha
Helix 28
28
B
145 164Right-handed alpha
Helix 29
29
B
181 189Right-handed alpha
Helix 30
30
B
213 217Right-handed 310
Helix 31
31
B
218 223Right-handed alpha
Helix 32
32
B
223 228Right-handed alpha
Helix 33
33
B
228 235Right-handed alpha
Helix 34
34
B
238 268Right-handed alpha
Helix 35
35
B
272 274Right-handed 310
Helix 36
36
B
289 293Right-handed 310
Helix 37
37
B
301 306Right-handed alpha
Helix 38
38
B
329 342Right-handed alpha
Helix 39
39
B
355 361Right-handed alpha
Helix 40
40
B
401 403Right-handed 310
Helix 41
41
B
423 425Right-handed 310
Helix 42
42
B
426 445Right-handed alpha
Helix 43
43
B
447 451Right-handed 310
Helix 44
44
B
456 460Right-handed 310
Helix 45
45
B
465 469Right-handed 310
Helix 46
46
B
473 478Right-handed alpha
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There are 4 sheets in PDB entry 3B5Q. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
309 312anti-parallel
Strand 3
A
276 282anti-parallel
Strand 4
A
17 23parallel
Strand 5
A
170 176parallel
Strand 6
A
111 116parallel
Strand 7
A
128 130parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 377first strand
Strand 2
A
383 390anti-parallel
Strand 3
A
394 399anti-parallel
Strand 4
A
404 409anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 53first strand
Strand 2
B
309 312anti-parallel
Strand 3
B
276 282anti-parallel
Strand 4
B
17 23parallel
Strand 5
B
170 176parallel
Strand 6
B
111 116parallel
Strand 7
B
128 130parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
371 375first strand
Strand 2
B
386 390anti-parallel
Strand 3
B
394 399anti-parallel
Strand 4
B
404 409anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il