Analysis of interatomic Contacts of Structural Units in PDB entry:
3B6V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3B6V entry

There are 2 chains in PDB entry 3B6V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8ARG 381
B
 ALA 7ASN 372
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3B6V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 27Right-handed alpha
Helix 2
2
A
69 78Right-handed alpha
Helix 3
3
A
78 87Right-handed alpha
Helix 4
4
A
102 108Right-handed alpha
Helix 5
5
A
118 134Right-handed alpha
Helix 6
6
A
187 202Right-handed alpha
Helix 7
7
A
294 308Right-handed alpha
Helix 8
8
A
316 319Right-handed 310
Helix 9
9
A
320 326Right-handed alpha
Helix 10
10
A
327 330Right-handed 310
Helix 11
11
A
345 347Right-handed 310
Helix 12
12
A
348 363Right-handed alpha
Helix 13
13
B
21 27Right-handed alpha
Helix 14
14
B
69 77Right-handed alpha
Helix 15
15
B
77 87Right-handed alpha
Helix 16
16
B
102 108Right-handed alpha
Helix 17
17
B
118 133Right-handed alpha
Helix 18
18
B
187 202Right-handed alpha
Helix 19
19
B
294 308Right-handed alpha
Helix 20
20
B
316 319Right-handed 310
Helix 21
21
B
320 326Right-handed alpha
Helix 22
22
B
345 347Right-handed 310
Helix 23
23
B
348 363Right-handed alpha
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There are 10 sheets in PDB entry 3B6V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
366 367anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
12 17parallel
Strand 3
A
335 342parallel
Strand 4
A
91 97parallel
Strand 5
A
238 246parallel
Strand 6
A
217 227anti-parallel
Strand 7
A
138 148anti-parallel
Strand 8
A
153 155anti-parallel
Strand 9
A
164 165anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
12 17parallel
Strand 3
A
335 342parallel
Strand 4
A
91 97parallel
Strand 5
A
238 246parallel
Strand 6
A
217 227anti-parallel
Strand 7
A
138 148anti-parallel
Strand 8
A
183 184anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
41 44anti-parallel
Strand 3
A
56 59anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 170first strand
Strand 2
A
174 177anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 10first strand
Strand 2
B
366 367anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
12 17parallel
Strand 3
B
335 342parallel
Strand 4
B
91 97parallel
Strand 5
B
238 246parallel
Strand 6
B
217 227anti-parallel
Strand 7
B
138 149anti-parallel
Strand 8
B
152 155anti-parallel
Strand 9
B
164 165anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
12 17parallel
Strand 3
B
335 342parallel
Strand 4
B
91 97parallel
Strand 5
B
238 246parallel
Strand 6
B
217 227anti-parallel
Strand 7
B
138 149anti-parallel
Strand 8
B
183 185anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 36first strand
Strand 2
B
41 44anti-parallel
Strand 3
B
56 59anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 168first strand
Strand 2
B
176 177anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il