Analysis of interatomic Contacts of Structural Units in PDB entry:
3B6W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3B6W entry

There are 4 chains in PDB entry 3B6W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 393	CYS 773
B	LYS 393	CYS 773
C	LYS 393	CYS 773
D	LYS 393	CYS 773

There are 49 helices in PDB entry 3B6W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	411	415	Right-handed 310
Helix 2	2	A	416	419	Right-handed 310
Helix 3	3	A	423	437	Right-handed alpha
Helix 4	4	A	461	469	Right-handed alpha
Helix 5	5	A	482	487	Right-handed alpha
Helix 6	6	A	635	641	Right-handed alpha
Helix 7	7	A	653	662	Right-handed alpha
Helix 8	8	A	664	675	Right-handed alpha
Helix 9	9	A	685	696	Right-handed alpha
Helix 10	10	A	706	714	Right-handed alpha
Helix 11	11	A	741	756	Right-handed alpha
Helix 12	12	A	757	767	Right-handed alpha
Helix 13	13	A	768	771	Right-handed 310
Helix 14	14	B	411	415	Right-handed 310
Helix 15	15	B	416	419	Right-handed 310
Helix 16	16	B	423	437	Right-handed alpha
Helix 17	17	B	461	469	Right-handed alpha
Helix 18	18	B	482	487	Right-handed alpha
Helix 19	19	B	635	641	Right-handed alpha
Helix 20	20	B	653	662	Right-handed alpha
Helix 21	21	B	664	677	Right-handed alpha
Helix 22	22	B	685	696	Right-handed alpha
Helix 23	23	B	706	714	Right-handed alpha
Helix 24	24	B	741	756	Right-handed alpha
Helix 25	25	B	757	767	Right-handed alpha
Helix 26	26	C	411	415	Right-handed 310
Helix 27	27	C	416	419	Right-handed 310
Helix 28	28	C	423	437	Right-handed alpha
Helix 29	29	C	461	469	Right-handed alpha
Helix 30	30	C	482	487	Right-handed alpha
Helix 31	31	C	635	641	Right-handed alpha
Helix 32	32	C	653	662	Right-handed alpha
Helix 33	33	C	664	677	Right-handed alpha
Helix 34	34	C	685	696	Right-handed alpha
Helix 35	35	C	706	713	Right-handed alpha
Helix 36	36	C	741	756	Right-handed alpha
Helix 37	37	C	757	768	Right-handed alpha
Helix 38	38	D	411	415	Right-handed 310
Helix 39	39	D	416	419	Right-handed 310
Helix 40	40	D	423	437	Right-handed alpha
Helix 41	41	D	461	469	Right-handed alpha
Helix 42	42	D	482	487	Right-handed alpha
Helix 43	43	D	635	641	Right-handed alpha
Helix 44	44	D	653	661	Right-handed alpha
Helix 45	45	D	665	677	Right-handed alpha
Helix 46	46	D	685	696	Right-handed alpha
Helix 47	47	D	706	713	Right-handed alpha
Helix 48	48	D	741	756	Right-handed alpha
Helix 49	49	D	757	768	Right-handed alpha

There are 20 sheets in PDB entry 3B6W. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	444	first strand
Strand 2	A	395	399	parallel
Strand 3	A	474	475	parallel

Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	408	first strand
Strand 2	A	421	422	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	489	491	first strand
Strand 2	A	735	737	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	496	498	first strand
Strand 2	A	730	732	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	646	649	first strand
Strand 2	A	700	705	parallel
Strand 3	A	500	505	anti-parallel
Strand 4	A	720	723	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	444	first strand
Strand 2	B	395	399	parallel
Strand 3	B	474	475	parallel

Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	B	421	422	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	491	first strand
Strand 2	B	735	737	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	496	498	first strand
Strand 2	B	730	732	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	649	first strand
Strand 2	B	700	705	parallel
Strand 3	B	500	505	anti-parallel
Strand 4	B	720	723	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	440	444	first strand
Strand 2	C	395	399	parallel
Strand 3	C	474	475	parallel

Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	408	first strand
Strand 2	C	421	422	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	489	491	first strand
Strand 2	C	735	737	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	498	first strand
Strand 2	C	730	732	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	646	648	first strand
Strand 2	C	700	705	parallel
Strand 3	C	500	505	anti-parallel
Strand 4	C	720	723	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	440	444	first strand
Strand 2	D	395	399	parallel
Strand 3	D	474	475	parallel

Back to list of sheets
Back to top of page

There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	408	first strand
Strand 2	D	421	422	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	489	491	first strand
Strand 2	D	735	737	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	496	498	first strand
Strand 2	D	730	732	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	702	705	first strand
Strand 2	D	500	505	anti-parallel
Strand 3	D	720	723	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3B6W

Analysis of interatomic Contacts of Structural Units in PDB entry:
3B6W