Analysis of interatomic Contacts of Structural Units in PDB entry:
3B8E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3B8E entry

There are 6 chains in PDB entry 3B8E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 19	TYR 1016
B	THR 28	ALA 73
G	TYR 23	ARG 51
C	ALA 19	TYR 1016
D	THR 28	ALA 73
H	TYR 23	ARG 51

There are 96 helices in PDB entry 3B8E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	21	26	Right-handed alpha
Helix 2	2	A	40	49	Right-handed alpha
Helix 3	3	A	57	69	Right-handed alpha
Helix 4	4	A	93	104	Right-handed alpha
Helix 5	5	A	116	120	Right-handed 310
Helix 6	6	A	122	139	Right-handed alpha
Helix 7	7	A	150	155	Right-handed alpha
Helix 8	8	A	174	178	Right-handed 310
Helix 9	9	A	208	213	Right-handed alpha
Helix 10	10	A	254	257	Right-handed 310
Helix 11	11	A	258	270	Right-handed alpha
Helix 12	12	A	275	295	Right-handed alpha
Helix 13	13	A	295	302	Right-handed alpha
Helix 14	14	A	309	323	Right-handed alpha
Helix 15	15	A	329	342	Right-handed alpha
Helix 16	16	A	344	348	Right-handed 310
Helix 17	17	A	353	359	Right-handed 310
Helix 18	18	A	408	421	Right-handed alpha
Helix 19	19	A	434	438	Right-handed 310
Helix 20	20	A	443	456	Right-handed alpha
Helix 21	21	A	459	467	Right-handed alpha
Helix 22	22	A	503	509	Right-handed alpha
Helix 23	23	A	525	540	Right-handed alpha
Helix 24	24	A	554	558	Right-handed 310
Helix 25	25	A	591	602	Right-handed alpha
Helix 26	26	A	613	624	Right-handed alpha
Helix 27	27	A	631	636	Right-handed alpha
Helix 28	28	A	660	664	Right-handed alpha
Helix 29	29	A	667	676	Right-handed alpha
Helix 30	30	A	687	700	Right-handed alpha
Helix 31	31	A	716	721	Right-handed alpha
Helix 32	32	A	734	739	Right-handed alpha
Helix 33	33	A	751	775	Right-handed alpha
Helix 34	34	A	776	789	Right-handed alpha
Helix 35	35	A	796	801	Right-handed alpha
Helix 36	36	A	808	818	Right-handed alpha
Helix 37	37	A	823	827	Right-handed 310
Helix 38	38	A	839	845	Right-handed alpha
Helix 39	39	A	849	871	Right-handed alpha
Helix 40	40	A	897	902	Right-handed alpha
Helix 41	41	A	911	930	Right-handed alpha
Helix 42	42	A	944	964	Right-handed alpha
Helix 43	43	A	966	970	Right-handed 310
Helix 44	44	A	984	1005	Right-handed alpha
Helix 45	45	A	1009	1014	Right-handed alpha
Helix 46	46	B	33	38	Right-handed alpha
Helix 47	47	B	39	59	Right-handed alpha
Helix 48	48	G	31	36	Right-handed 310
Helix 49	49	C	21	26	Right-handed alpha
Helix 50	50	C	40	49	Right-handed alpha
Helix 51	51	C	57	69	Right-handed alpha
Helix 52	52	C	81	86	Right-handed alpha
Helix 53	53	C	93	104	Right-handed alpha
Helix 54	54	C	116	120	Right-handed 310
Helix 55	55	C	122	139	Right-handed alpha
Helix 56	56	C	150	156	Right-handed alpha
Helix 57	57	C	174	178	Right-handed 310
Helix 58	58	C	208	213	Right-handed alpha
Helix 59	59	C	254	257	Right-handed 310
Helix 60	60	C	258	270	Right-handed alpha
Helix 61	61	C	275	302	Right-handed alpha
Helix 62	62	C	310	316	Right-handed alpha
Helix 63	63	C	316	322	Right-handed alpha
Helix 64	64	C	329	345	Right-handed alpha
Helix 65	65	C	346	348	Right-handed 310
Helix 66	66	C	353	359	Right-handed 310
Helix 67	67	C	408	421	Right-handed alpha
Helix 68	68	C	434	438	Right-handed 310
Helix 69	69	C	443	456	Right-handed alpha
Helix 70	70	C	459	467	Right-handed alpha
Helix 71	71	C	503	509	Right-handed alpha
Helix 72	72	C	525	540	Right-handed alpha
Helix 73	73	C	554	558	Right-handed 310
Helix 74	74	C	591	602	Right-handed alpha
Helix 75	75	C	613	624	Right-handed alpha
Helix 76	76	C	631	636	Right-handed alpha
Helix 77	77	C	660	664	Right-handed alpha
Helix 78	78	C	667	676	Right-handed alpha
Helix 79	79	C	687	700	Right-handed alpha
Helix 80	80	C	711	715	Right-handed 310
Helix 81	81	C	716	721	Right-handed alpha
Helix 82	82	C	734	739	Right-handed alpha
Helix 83	83	C	751	774	Right-handed alpha
Helix 84	84	C	776	779	Right-handed 310
Helix 85	85	C	780	789	Right-handed alpha
Helix 86	86	C	796	801	Right-handed alpha
Helix 87	87	C	808	818	Right-handed alpha
Helix 88	88	C	839	845	Right-handed alpha
Helix 89	89	C	849	868	Right-handed alpha
Helix 90	90	C	911	928	Right-handed alpha
Helix 91	91	C	944	963	Right-handed alpha
Helix 92	92	C	981	983	Right-handed 310
Helix 93	93	C	984	1005	Right-handed alpha
Helix 94	94	D	31	37	Right-handed alpha
Helix 95	95	D	38	59	Right-handed alpha
Helix 96	96	H	37	41	Right-handed 310

There are 10 sheets in PDB entry 3B8E. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	220	first strand
Strand 2	A	195	207	anti-parallel
Strand 3	A	241	253	anti-parallel
Strand 4	A	183	187	anti-parallel
Strand 5	A	163	165	anti-parallel
Strand 6	A	170	172	anti-parallel
Strand 7	C	170	172	parallel
Strand 8	C	163	165	anti-parallel
Strand 9	C	183	187	anti-parallel
Strand 10	C	241	253	anti-parallel
Strand 11	C	195	207	anti-parallel
Strand 12	C	218	220	anti-parallel

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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	236	first strand
Strand 2	A	195	207	anti-parallel
Strand 3	A	241	253	anti-parallel
Strand 4	A	183	187	anti-parallel
Strand 5	A	163	165	anti-parallel
Strand 6	A	170	172	anti-parallel
Strand 7	C	170	172	parallel
Strand 8	C	163	165	anti-parallel
Strand 9	C	183	187	anti-parallel
Strand 10	C	241	253	anti-parallel
Strand 11	C	195	207	anti-parallel
Strand 12	C	235	236	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	351	first strand
Strand 2	A	741	742	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	657	659	first strand
Strand 2	A	682	684	parallel
Strand 3	A	605	609	parallel
Strand 4	A	365	368	parallel
Strand 5	A	705	708	parallel
Strand 6	A	723	725	parallel

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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	392	first strand
Strand 2	A	380	384	anti-parallel
Strand 3	A	576	585	anti-parallel
Strand 4	A	544	553	anti-parallel
Strand 5	A	496	502	anti-parallel
Strand 6	A	482	487	anti-parallel
Strand 7	A	468	473	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	392	first strand
Strand 2	A	380	384	anti-parallel
Strand 3	A	576	585	anti-parallel
Strand 4	A	511	514	parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	351	first strand
Strand 2	C	741	742	anti-parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	657	659	first strand
Strand 2	C	682	684	parallel
Strand 3	C	605	609	parallel
Strand 4	C	365	368	parallel
Strand 5	C	705	708	parallel
Strand 6	C	723	725	parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	391	392	first strand
Strand 2	C	380	384	anti-parallel
Strand 3	C	576	585	anti-parallel
Strand 4	C	544	552	anti-parallel
Strand 5	C	497	502	anti-parallel
Strand 6	C	482	487	anti-parallel
Strand 7	C	468	473	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	391	392	first strand
Strand 2	C	380	384	anti-parallel
Strand 3	C	576	585	anti-parallel
Strand 4	C	511	514	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3B8E

Analysis of interatomic Contacts of Structural Units in PDB entry:
3B8E