Analysis of interatomic Contacts of Structural Units in PDB entry:
3B8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3B8F entry

There are 4 chains in PDB entry 3B8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2ARG 142
B
 LEU 1ARG 142
C
 ASN 2THR 141
D
 LEU 1ARG 142
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3B8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 19Right-handed alpha
Helix 2
2
A
46 50Right-handed 310
Helix 3
3
A
54 65Right-handed alpha
Helix 4
4
A
89 97Right-handed alpha
Helix 5
5
A
98 100Right-handed 310
Helix 6
6
A
119 123Right-handed alpha
Helix 7
7
A
126 130Right-handed 310
Helix 8
8
A
131 140Right-handed alpha
Helix 9
9
B
2 19Right-handed alpha
Helix 10
10
B
46 50Right-handed 310
Helix 11
11
B
54 65Right-handed alpha
Helix 12
12
B
89 97Right-handed alpha
Helix 13
13
B
98 100Right-handed 310
Helix 14
14
B
119 123Right-handed alpha
Helix 15
15
B
126 130Right-handed 310
Helix 16
16
B
131 140Right-handed alpha
Helix 17
17
C
2 19Right-handed alpha
Helix 18
18
C
46 50Right-handed 310
Helix 19
19
C
54 65Right-handed alpha
Helix 20
20
C
89 97Right-handed alpha
Helix 21
21
C
98 100Right-handed 310
Helix 22
22
C
119 123Right-handed alpha
Helix 23
23
C
126 130Right-handed 310
Helix 24
24
C
131 140Right-handed alpha
Helix 25
25
D
2 19Right-handed alpha
Helix 26
26
D
46 50Right-handed 310
Helix 27
27
D
54 65Right-handed alpha
Helix 28
28
D
89 97Right-handed alpha
Helix 29
29
D
98 100Right-handed 310
Helix 30
30
D
119 123Right-handed alpha
Helix 31
31
D
126 130Right-handed 310
Helix 32
32
D
131 140Right-handed alpha
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There are 8 sheets in PDB entry 3B8F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
24 31anti-parallel
Strand 3
A
68 76anti-parallel
Strand 4
A
84 85anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
24 31anti-parallel
Strand 3
A
68 76anti-parallel
Strand 4
A
104 106parallel
Strand 5
A
116 118anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 39first strand
Strand 2
B
24 31anti-parallel
Strand 3
B
68 76anti-parallel
Strand 4
B
84 85anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 39first strand
Strand 2
B
24 31anti-parallel
Strand 3
B
68 76anti-parallel
Strand 4
B
104 106parallel
Strand 5
B
116 118anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
36 39first strand
Strand 2
C
24 31anti-parallel
Strand 3
C
68 76anti-parallel
Strand 4
C
84 85anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
36 39first strand
Strand 2
C
24 31anti-parallel
Strand 3
C
68 76anti-parallel
Strand 4
C
104 106parallel
Strand 5
C
116 118anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
36 39first strand
Strand 2
D
24 31anti-parallel
Strand 3
D
68 76anti-parallel
Strand 4
D
84 85anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
36 39first strand
Strand 2
D
24 31anti-parallel
Strand 3
D
68 76anti-parallel
Strand 4
D
104 106parallel
Strand 5
D
116 118anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il