Analysis of interatomic Contacts of Structural Units in PDB entry:
3B8L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3B8L entry

There are 6 chains in PDB entry 3B8L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE -2LYS 144
B
 MSE 1LYS 144
C
 MSE 1LYS 144
D
 MSE 1LYS 144
E
 MSE 1LYS 144
F
 GLN 2LYS 144
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3B8L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 24Right-handed alpha
Helix 2
2
A
27 33Right-handed alpha
Helix 3
3
A
43 47Right-handed 310
Helix 4
4
A
53 67Right-handed alpha
Helix 5
5
A
140 144Right-handed 310
Helix 6
6
B
4 24Right-handed alpha
Helix 7
7
B
27 33Right-handed alpha
Helix 8
8
B
43 47Right-handed 310
Helix 9
9
B
53 67Right-handed alpha
Helix 10
10
B
140 144Right-handed 310
Helix 11
11
C
4 24Right-handed alpha
Helix 12
12
C
27 33Right-handed alpha
Helix 13
13
C
43 47Right-handed 310
Helix 14
14
C
53 67Right-handed alpha
Helix 15
15
C
140 144Right-handed 310
Helix 16
16
D
4 24Right-handed alpha
Helix 17
17
D
27 33Right-handed alpha
Helix 18
18
D
43 47Right-handed 310
Helix 19
19
D
53 67Right-handed alpha
Helix 20
20
D
140 144Right-handed 310
Helix 21
21
E
4 24Right-handed alpha
Helix 22
22
E
27 33Right-handed alpha
Helix 23
23
E
43 47Right-handed 310
Helix 24
24
E
53 67Right-handed alpha
Helix 25
25
E
140 144Right-handed 310
Helix 26
26
F
4 24Right-handed alpha
Helix 27
27
F
27 33Right-handed alpha
Helix 28
28
F
43 47Right-handed 310
Helix 29
29
F
53 67Right-handed alpha
Helix 30
30
F
140 144Right-handed 310
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There are 11 sheets in PDB entry 3B8L. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 52first strand
Strand 2
A
35 42anti-parallel
Strand 3
A
122 132parallel
Strand 4
A
105 119anti-parallel
Strand 5
A
87 100anti-parallel
Strand 6
A
68 83anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 52first strand
Strand 2
A
35 42anti-parallel
Strand 3
A
122 132parallel
Strand 4
A
105 119anti-parallel
Strand 5
A
137 138anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 52first strand
Strand 2
B
35 42anti-parallel
Strand 3
B
122 132parallel
Strand 4
B
105 119anti-parallel
Strand 5
B
87 100anti-parallel
Strand 6
B
68 83anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 52first strand
Strand 2
B
35 42anti-parallel
Strand 3
B
122 132parallel
Strand 4
B
105 119anti-parallel
Strand 5
B
137 138anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
35 41anti-parallel
Strand 3
C
122 132parallel
Strand 4
C
105 119anti-parallel
Strand 5
C
87 100anti-parallel
Strand 6
C
68 83anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
35 41anti-parallel
Strand 3
C
122 132parallel
Strand 4
C
105 119anti-parallel
Strand 5
C
137 138anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
51 52first strand
Strand 2
D
35 41anti-parallel
Strand 3
D
122 132parallel
Strand 4
D
105 119anti-parallel
Strand 5
D
87 100anti-parallel
Strand 6
D
68 83anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
51 52first strand
Strand 2
D
35 41anti-parallel
Strand 3
D
122 132parallel
Strand 4
D
105 119anti-parallel
Strand 5
D
137 138anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
51 52first strand
Strand 2
E
35 41anti-parallel
Strand 3
E
122 132parallel
Strand 4
E
105 119anti-parallel
Strand 5
E
87 100anti-parallel
Strand 6
E
68 83anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
51 52first strand
Strand 2
E
35 41anti-parallel
Strand 3
E
122 132parallel
Strand 4
E
105 119anti-parallel
Strand 5
E
137 138anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
51 52first strand
Strand 2
F
35 42anti-parallel
Strand 3
F
122 132parallel
Strand 4
F
105 119anti-parallel
Strand 5
F
87 100anti-parallel
Strand 6
F
68 83anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il