Analysis of interatomic Contacts of Structural Units in PDB entry:
3B8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3B8M entry

There are 3 chains in PDB entry 3B8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 64PRO 330
B
 LYS 64PRO 330
C
 LYS 64PRO 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 3B8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
75 78Right-handed 310
Helix 2
2
A
79 92Right-handed alpha
Helix 3
3
A
99 112Right-handed alpha
Helix 4
4
A
113 123Right-handed alpha
Helix 5
5
A
124 130Right-handed alpha
Helix 6
6
A
139 150Right-handed alpha
Helix 7
7
A
180 251Right-handed alpha
Helix 8
8
A
274 287Right-handed alpha
Helix 9
9
A
290 294Right-handed 310
Helix 10
10
A
295 311Right-handed alpha
Helix 11
11
B
75 78Right-handed 310
Helix 12
12
B
79 92Right-handed alpha
Helix 13
13
B
99 113Right-handed alpha
Helix 14
14
B
113 123Right-handed alpha
Helix 15
15
B
140 150Right-handed alpha
Helix 16
16
B
180 251Right-handed alpha
Helix 17
17
B
273 288Right-handed alpha
Helix 18
18
B
295 311Right-handed alpha
Helix 19
19
C
75 78Right-handed 310
Helix 20
20
C
79 92Right-handed alpha
Helix 21
21
C
99 112Right-handed alpha
Helix 22
22
C
113 122Right-handed alpha
Helix 23
23
C
124 130Right-handed alpha
Helix 24
24
C
139 150Right-handed alpha
Helix 25
25
C
180 250Right-handed alpha
Helix 26
26
C
274 288Right-handed alpha
Helix 27
27
C
295 311Right-handed alpha
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There are 3 sheets in PDB entry 3B8M. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 156first strand
Strand 2
A
172 178anti-parallel
Strand 3
A
65 72anti-parallel
Strand 4
A
322 325anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 156first strand
Strand 2
B
172 178anti-parallel
Strand 3
B
65 72anti-parallel
Strand 4
B
322 325anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
152 156first strand
Strand 2
C
172 178anti-parallel
Strand 3
C
65 72anti-parallel
Strand 4
C
322 325anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il