Analysis of interatomic Contacts of Structural Units in PDB entry:
3B8P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3B8P entry

There are 5 chains in PDB entry 3B8P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 54PRO 292
B
 LYS 55PRO 292
C
 GLU 54PRO 292
D
 GLU 54PRO 292
E
 GLU 54PRO 292
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3B8P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
67 69Right-handed 310
Helix 2
2
A
70 82Right-handed alpha
Helix 3
3
A
87 112Right-handed alpha
Helix 4
4
A
140 200Right-handed alpha
Helix 5
5
A
209 214Right-handed alpha
Helix 6
6
A
251 266Right-handed alpha
Helix 7
7
B
66 82Right-handed alpha
Helix 8
8
B
87 112Right-handed alpha
Helix 9
9
B
140 174Right-handed alpha
Helix 10
10
B
181 186Right-handed alpha
Helix 11
11
B
252 254Right-handed 310
Helix 12
12
B
255 267Right-handed alpha
Helix 13
13
C
67 69Right-handed 310
Helix 14
14
C
70 82Right-handed alpha
Helix 15
15
C
87 112Right-handed alpha
Helix 16
16
C
140 178Right-handed alpha
Helix 17
17
C
178 188Right-handed alpha
Helix 18
18
C
251 265Right-handed alpha
Helix 19
19
D
66 81Right-handed alpha
Helix 20
20
D
87 113Right-handed alpha
Helix 21
21
D
140 186Right-handed alpha
Helix 22
22
D
190 194Right-handed 310
Helix 23
23
D
256 261Right-handed alpha
Helix 24
24
D
262 267Right-handed alpha
Helix 25
25
D
270 274Right-handed 310
Helix 26
26
E
66 69Right-handed 310
Helix 27
27
E
70 82Right-handed alpha
Helix 28
28
E
83 85Right-handed 310
Helix 29
29
E
87 111Right-handed alpha
Helix 30
30
E
140 190Right-handed alpha
Helix 31
31
E
255 266Right-handed alpha
Helix 32
32
E
270 274Right-handed 310
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There are 5 sheets in PDB entry 3B8P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 123first strand
Strand 2
A
132 138anti-parallel
Strand 3
A
56 63anti-parallel
Strand 4
A
278 281anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 123first strand
Strand 2
B
132 138anti-parallel
Strand 3
B
56 63anti-parallel
Strand 4
B
278 281anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
119 123first strand
Strand 2
C
132 138anti-parallel
Strand 3
C
56 63anti-parallel
Strand 4
C
278 281anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
119 123first strand
Strand 2
D
132 138anti-parallel
Strand 3
D
56 63anti-parallel
Strand 4
D
278 281anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
119 123first strand
Strand 2
E
132 138anti-parallel
Strand 3
E
56 63anti-parallel
Strand 4
E
278 281anti-parallel
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