Analysis of interatomic Contacts of Structural Units in PDB entry:
3B8Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3B8Z entry

There are 2 chains in PDB entry 3B8Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 264ILE 480
B
 SER 264ILE 480
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 3B8Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
276 284Right-handed alpha
Helix 2
2
A
286 303Right-handed alpha
Helix 3
3
A
304 308Right-handed 310
Helix 4
4
A
333 349Right-handed alpha
Helix 5
5
A
389 392Right-handed 310
Helix 6
6
A
403 416Right-handed alpha
Helix 7
7
A
423 431Right-handed alpha
Helix 8
8
A
453 466Right-handed alpha
Helix 9
9
A
469 473Right-handed 310
Helix 10
10
B
276 284Right-handed alpha
Helix 11
11
B
286 303Right-handed alpha
Helix 12
12
B
304 308Right-handed 310
Helix 13
13
B
333 349Right-handed alpha
Helix 14
14
B
389 392Right-handed 310
Helix 15
15
B
403 416Right-handed alpha
Helix 16
16
B
423 431Right-handed alpha
Helix 17
17
B
453 466Right-handed alpha
Helix 18
18
B
469 473Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 3B8Z. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 320first strand
Strand 2
A
267 275parallel
Strand 3
A
361 366parallel
Strand 4
A
394 398parallel
Strand 5
A
380 382anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
311 320first strand
Strand 2
B
267 275parallel
Strand 3
B
361 366parallel
Strand 4
B
394 398parallel
Strand 5
B
380 382anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il