Analysis of interatomic Contacts of Structural Units in PDB entry:
3B9T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3B9T entry

There are 4 chains in PDB entry 3B9T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 64	ASP 482
B	GLY 68	ARG 481
C	GLY 64	ASP 482
D	GLY 64	ARG 481

There are 50 helices in PDB entry 3B9T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	111	114	Right-handed 310
Helix 2	2	A	115	120	Right-handed alpha
Helix 3	3	A	123	131	Right-handed alpha
Helix 4	4	A	191	195	Right-handed 310
Helix 5	5	A	210	214	Right-handed 310
Helix 6	6	A	268	272	Right-handed 310
Helix 7	7	A	370	374	Right-handed 310
Helix 8	8	A	402	408	Right-handed alpha
Helix 9	9	A	410	419	Right-handed alpha
Helix 10	10	A	420	440	Right-handed alpha
Helix 11	11	A	443	454	Right-handed alpha
Helix 12	12	A	476	478	Right-handed 310
Helix 13	13	B	111	114	Right-handed 310
Helix 14	14	B	115	120	Right-handed alpha
Helix 15	15	B	123	131	Right-handed alpha
Helix 16	16	B	191	195	Right-handed 310
Helix 17	17	B	210	214	Right-handed 310
Helix 18	18	B	370	374	Right-handed 310
Helix 19	19	B	402	407	Right-handed alpha
Helix 20	20	B	410	415	Right-handed alpha
Helix 21	21	B	416	418	Right-handed 310
Helix 22	22	B	420	440	Right-handed alpha
Helix 23	23	B	443	455	Right-handed alpha
Helix 24	24	B	476	478	Right-handed 310
Helix 25	25	C	111	114	Right-handed 310
Helix 26	26	C	115	120	Right-handed alpha
Helix 27	27	C	123	131	Right-handed alpha
Helix 28	28	C	191	195	Right-handed 310
Helix 29	29	C	210	214	Right-handed 310
Helix 30	30	C	268	272	Right-handed 310
Helix 31	31	C	370	374	Right-handed 310
Helix 32	32	C	402	408	Right-handed alpha
Helix 33	33	C	410	415	Right-handed alpha
Helix 34	34	C	416	418	Right-handed 310
Helix 35	35	C	420	440	Right-handed alpha
Helix 36	36	C	443	455	Right-handed alpha
Helix 37	37	C	476	478	Right-handed 310
Helix 38	38	D	111	114	Right-handed 310
Helix 39	39	D	115	120	Right-handed alpha
Helix 40	40	D	123	131	Right-handed alpha
Helix 41	41	D	191	195	Right-handed 310
Helix 42	42	D	210	214	Right-handed 310
Helix 43	43	D	268	272	Right-handed 310
Helix 44	44	D	370	374	Right-handed 310
Helix 45	45	D	402	407	Right-handed alpha
Helix 46	46	D	410	415	Right-handed alpha
Helix 47	47	D	416	418	Right-handed 310
Helix 48	48	D	420	440	Right-handed alpha
Helix 49	49	D	443	455	Right-handed alpha
Helix 50	50	D	476	478	Right-handed 310

There are 27 sheets in PDB entry 3B9T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	69	first strand
Strand 2	C	72	75	anti-parallel
Strand 3	C	102	107	parallel
Strand 4	C	360	369	anti-parallel
Strand 5	C	176	186	anti-parallel
Strand 6	C	325	329	anti-parallel
Strand 7	C	386	388	anti-parallel
Strand 8	C	392	398	anti-parallel
Strand 9	C	468	474	anti-parallel
Strand 10	C	456	461	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	461	first strand
Strand 2	A	468	474	anti-parallel
Strand 3	A	392	398	anti-parallel
Strand 4	A	386	388	anti-parallel
Strand 5	A	325	329	anti-parallel
Strand 6	A	176	186	anti-parallel
Strand 7	A	360	369	anti-parallel
Strand 8	A	102	107	anti-parallel
Strand 9	A	72	75	parallel
Strand 10	C	68	69	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	84	first strand
Strand 2	A	161	168	anti-parallel
Strand 3	A	335	345	anti-parallel
Strand 4	A	289	295	anti-parallel
Strand 5	A	312	314	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	97	first strand
Strand 2	A	161	168	parallel
Strand 3	A	335	345	anti-parallel
Strand 4	A	356	357	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	87	first strand
Strand 2	A	303	304	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	204	first strand
Strand 2	A	223	230	anti-parallel
Strand 3	A	237	245	anti-parallel
Strand 4	A	275	276	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	204	first strand
Strand 2	A	223	230	anti-parallel
Strand 3	A	237	245	anti-parallel
Strand 4	A	284	285	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	250	first strand
Strand 2	A	256	257	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	461	first strand
Strand 2	B	468	474	anti-parallel
Strand 3	B	392	398	anti-parallel
Strand 4	B	386	388	anti-parallel
Strand 5	B	325	329	anti-parallel
Strand 6	B	176	186	anti-parallel
Strand 7	B	360	369	anti-parallel
Strand 8	B	102	107	anti-parallel
Strand 9	B	72	75	parallel
Strand 10	D	68	69	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	84	first strand
Strand 2	B	161	168	anti-parallel
Strand 3	B	335	345	anti-parallel
Strand 4	B	289	295	anti-parallel
Strand 5	B	312	313	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	97	first strand
Strand 2	B	161	168	parallel
Strand 3	B	335	345	anti-parallel
Strand 4	B	356	357	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	87	first strand
Strand 2	B	303	304	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	204	first strand
Strand 2	B	223	230	anti-parallel
Strand 3	B	237	245	anti-parallel
Strand 4	B	284	285	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	250	first strand
Strand 2	B	256	257	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	84	first strand
Strand 2	C	161	168	anti-parallel
Strand 3	C	335	345	anti-parallel
Strand 4	C	289	295	anti-parallel
Strand 5	C	312	313	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	97	first strand
Strand 2	C	161	168	parallel
Strand 3	C	335	345	anti-parallel
Strand 4	C	356	357	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	87	first strand
Strand 2	C	303	304	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	197	204	first strand
Strand 2	C	223	230	anti-parallel
Strand 3	C	237	245	anti-parallel
Strand 4	C	275	276	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	197	204	first strand
Strand 2	C	223	230	anti-parallel
Strand 3	C	237	245	anti-parallel
Strand 4	C	284	285	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	250	first strand
Strand 2	C	256	257	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	75	first strand
Strand 2	D	102	107	parallel
Strand 3	D	360	369	anti-parallel
Strand 4	D	176	186	anti-parallel
Strand 5	D	325	329	anti-parallel
Strand 6	D	386	388	anti-parallel
Strand 7	D	392	398	anti-parallel
Strand 8	D	468	474	anti-parallel
Strand 9	D	456	461	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	84	first strand
Strand 2	D	161	168	anti-parallel
Strand 3	D	335	345	anti-parallel
Strand 4	D	289	295	anti-parallel
Strand 5	D	312	313	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	97	first strand
Strand 2	D	161	168	parallel
Strand 3	D	335	345	anti-parallel
Strand 4	D	356	357	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	87	first strand
Strand 2	D	303	304	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	197	204	first strand
Strand 2	D	223	230	anti-parallel
Strand 3	D	237	245	anti-parallel
Strand 4	D	275	276	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	197	204	first strand
Strand 2	D	223	230	anti-parallel
Strand 3	D	237	245	anti-parallel
Strand 4	D	284	285	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	250	first strand
Strand 2	D	256	257	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3B9T

Analysis of interatomic Contacts of Structural Units in PDB entry:
3B9T