Analysis of interatomic Contacts of Structural Units in PDB entry:
3BB1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BB1 entry

There are 8 chains in PDB entry 3BB1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ASP 258
B
 VAL 8GLY 259
C
 VAL 8ASP 258
D
 THR 7ASP 258
E
 VAL 8ASP 258
F
 VAL 8ILE 257
G
 ALA 2ASP 258
H
 VAL 8ASP 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 3BB1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 17Right-handed 310
Helix 2
2
A
19 35Right-handed alpha
Helix 3
3
A
51 61Right-handed alpha
Helix 4
4
A
104 115Right-handed alpha
Helix 5
5
A
135 149Right-handed alpha
Helix 6
6
A
151 155Right-handed 310
Helix 7
7
A
173 194Right-handed alpha
Helix 8
8
A
230 244Right-handed alpha
Helix 9
9
A
253 258Right-handed alpha
Helix 10
10
B
12 17Right-handed 310
Helix 11
11
B
19 35Right-handed alpha
Helix 12
12
B
51 61Right-handed alpha
Helix 13
13
B
104 115Right-handed alpha
Helix 14
14
B
135 149Right-handed alpha
Helix 15
15
B
151 155Right-handed 310
Helix 16
16
B
173 194Right-handed alpha
Helix 17
17
B
230 244Right-handed alpha
Helix 18
18
B
253 258Right-handed alpha
Helix 19
19
C
12 17Right-handed 310
Helix 20
20
C
19 35Right-handed alpha
Helix 21
21
C
51 61Right-handed alpha
Helix 22
22
C
104 115Right-handed alpha
Helix 23
23
C
135 149Right-handed alpha
Helix 24
24
C
151 155Right-handed 310
Helix 25
25
C
173 194Right-handed alpha
Helix 26
26
C
230 244Right-handed alpha
Helix 27
27
C
253 258Right-handed alpha
Helix 28
28
D
12 17Right-handed 310
Helix 29
29
D
19 35Right-handed alpha
Helix 30
30
D
51 61Right-handed alpha
Helix 31
31
D
104 115Right-handed alpha
Helix 32
32
D
135 149Right-handed alpha
Helix 33
33
D
151 155Right-handed 310
Helix 34
34
D
173 194Right-handed alpha
Helix 35
35
D
230 244Right-handed alpha
Helix 36
36
D
253 258Right-handed alpha
Helix 37
37
E
12 17Right-handed 310
Helix 38
38
E
19 35Right-handed alpha
Helix 39
39
E
51 61Right-handed alpha
Helix 40
40
E
104 115Right-handed alpha
Helix 41
41
E
135 149Right-handed alpha
Helix 42
42
E
151 155Right-handed 310
Helix 43
43
E
173 194Right-handed alpha
Helix 44
44
E
230 244Right-handed alpha
Helix 45
45
E
253 258Right-handed alpha
Helix 46
46
F
12 17Right-handed 310
Helix 47
47
F
19 35Right-handed alpha
Helix 48
48
F
51 61Right-handed alpha
Helix 49
49
F
104 115Right-handed alpha
Helix 50
50
F
135 149Right-handed alpha
Helix 51
51
F
151 155Right-handed 310
Helix 52
52
F
173 194Right-handed alpha
Helix 53
53
F
230 244Right-handed alpha
Helix 54
54
F
253 257Right-handed alpha
Helix 55
55
G
12 17Right-handed 310
Helix 56
56
G
19 35Right-handed alpha
Helix 57
57
G
51 61Right-handed alpha
Helix 58
58
G
104 115Right-handed alpha
Helix 59
59
G
135 149Right-handed alpha
Helix 60
60
G
151 155Right-handed 310
Helix 61
61
G
173 194Right-handed alpha
Helix 62
62
G
230 244Right-handed alpha
Helix 63
63
G
253 258Right-handed alpha
Helix 64
64
H
12 17Right-handed 310
Helix 65
65
H
19 35Right-handed alpha
Helix 66
66
H
51 61Right-handed alpha
Helix 67
67
H
104 115Right-handed alpha
Helix 68
68
H
135 149Right-handed alpha
Helix 69
69
H
151 155Right-handed 310
Helix 70
70
H
173 194Right-handed alpha
Helix 71
71
H
230 244Right-handed alpha
Helix 72
72
H
253 258Right-handed alpha
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There are 16 sheets in PDB entry 3BB1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 84first strand
Strand 2
A
87 93anti-parallel
Strand 3
A
39 46parallel
Strand 4
A
122 128parallel
Strand 5
A
157 162parallel
Strand 6
A
206 208parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 120first strand
Strand 2
A
250 252anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 84first strand
Strand 2
B
87 93anti-parallel
Strand 3
B
39 46parallel
Strand 4
B
122 128parallel
Strand 5
B
157 162parallel
Strand 6
B
206 208parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 120first strand
Strand 2
B
250 252anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
78 84first strand
Strand 2
C
87 93anti-parallel
Strand 3
C
39 46parallel
Strand 4
C
122 128parallel
Strand 5
C
157 162parallel
Strand 6
C
206 208parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 120first strand
Strand 2
C
250 252anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
78 84first strand
Strand 2
D
87 93anti-parallel
Strand 3
D
39 46parallel
Strand 4
D
122 128parallel
Strand 5
D
157 162parallel
Strand 6
D
206 208parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
118 120first strand
Strand 2
D
250 252anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
78 84first strand
Strand 2
E
87 93anti-parallel
Strand 3
E
39 46parallel
Strand 4
E
122 128parallel
Strand 5
E
157 162parallel
Strand 6
E
206 208parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
118 120first strand
Strand 2
E
250 252anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
78 84first strand
Strand 2
F
87 93anti-parallel
Strand 3
F
39 46parallel
Strand 4
F
122 128parallel
Strand 5
F
157 162parallel
Strand 6
F
206 208parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
118 120first strand
Strand 2
F
250 252anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
78 84first strand
Strand 2
G
87 93anti-parallel
Strand 3
G
39 46parallel
Strand 4
G
122 128parallel
Strand 5
G
157 162parallel
Strand 6
G
206 208parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
118 120first strand
Strand 2
G
250 252anti-parallel
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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
78 84first strand
Strand 2
H
87 93anti-parallel
Strand 3
H
39 46parallel
Strand 4
H
122 128parallel
Strand 5
H
157 162parallel
Strand 6
H
206 208parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
118 120first strand
Strand 2
H
250 252anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il