Analysis of interatomic Contacts of Structural Units in PDB entry:
3BBJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BBJ entry

There are 2 chains in PDB entry 3BBJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 4ARG 271
B
 GLY 0ARG 271
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3BBJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 11Right-handed alpha
Helix 2
2
A
26 30Right-handed 310
Helix 3
3
A
36 51Right-handed alpha
Helix 4
4
A
127 131Right-handed 310
Helix 5
5
A
141 148Right-handed 310
Helix 6
6
A
155 163Right-handed alpha
Helix 7
7
A
189 198Right-handed alpha
Helix 8
8
A
203 208Right-handed 310
Helix 9
9
B
5 11Right-handed alpha
Helix 10
10
B
26 28Right-handed 310
Helix 11
11
B
36 51Right-handed alpha
Helix 12
12
B
127 131Right-handed 310
Helix 13
13
B
145 148Right-handed 310
Helix 14
14
B
155 163Right-handed alpha
Helix 15
15
B
189 198Right-handed alpha
Helix 16
16
B
203 208Right-handed 310
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There are 5 sheets in PDB entry 3BBJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 13 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
20 25anti-parallel
Strand 3
A
71 81anti-parallel
Strand 4
A
87 95anti-parallel
Strand 5
A
98 108anti-parallel
Strand 6
A
56 64anti-parallel
Strand 7
A
216 223anti-parallel
Strand 8
A
259 268anti-parallel
Strand 9
A
245 253anti-parallel
Strand 10
A
232 237anti-parallel
Strand 11
A
172 179anti-parallel
Strand 12
A
150 154anti-parallel
Strand 13
A
132 133anti-parallel
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There are 11 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
20 25anti-parallel
Strand 3
A
71 81anti-parallel
Strand 4
A
87 95anti-parallel
Strand 5
A
98 108anti-parallel
Strand 6
A
56 64anti-parallel
Strand 7
A
216 223anti-parallel
Strand 8
A
259 268anti-parallel
Strand 9
A
245 253anti-parallel
Strand 10
A
240 242anti-parallel
Strand 11
B
118 119anti-parallel
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There are 11 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
B
240 242anti-parallel
Strand 3
B
245 253anti-parallel
Strand 4
B
259 268anti-parallel
Strand 5
B
216 223anti-parallel
Strand 6
B
56 64anti-parallel
Strand 7
B
98 108anti-parallel
Strand 8
B
87 95anti-parallel
Strand 9
B
71 81anti-parallel
Strand 10
B
20 25anti-parallel
Strand 11
B
14 17anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
B
240 242anti-parallel
Strand 3
B
245 253anti-parallel
Strand 4
B
232 237anti-parallel
Strand 5
B
172 179anti-parallel
Strand 6
B
150 154anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 31first strand
Strand 2
B
34 35anti-parallel
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