Analysis of interatomic Contacts of Structural Units in PDB entry:
3BC8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BC8 entry

There are 2 chains in PDB entry 3BC8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 23ASP 283
A
 ASN 285ARG 467
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3BC8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 39Right-handed alpha
Helix 2
2
A
47 61Right-handed alpha
Helix 3
3
A
62 66Right-handed 310
Helix 4
4
A
81 88Right-handed alpha
Helix 5
5
A
108 130Right-handed alpha
Helix 6
6
A
143 159Right-handed alpha
Helix 7
7
A
172 182Right-handed alpha
Helix 8
8
A
201 213Right-handed alpha
Helix 9
9
A
234 246Right-handed alpha
Helix 10
10
A
259 273Right-handed alpha
Helix 11
11
A
282 287Right-handed alpha
Helix 12
12
A
299 310Right-handed alpha
Helix 13
13
A
316 359Right-handed alpha
Helix 14
14
A
386 398Right-handed alpha
Helix 15
15
A
443 466Right-handed alpha
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There are 4 sheets in PDB entry 3BC8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 140first strand
Strand 2
A
293 297anti-parallel
Strand 3
A
277 281anti-parallel
Strand 4
A
249 252parallel
Strand 5
A
217 223parallel
Strand 6
A
164 168parallel
Strand 7
A
185 189parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 194first strand
Strand 2
A
197 199anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 376first strand
Strand 2
A
433 437anti-parallel
Strand 3
A
404 406anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 414first strand
Strand 2
A
417 420anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il