Analysis of interatomic Contacts of Structural Units in PDB entry:
3BD9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BD9 entry

There is 1 chain in PDB entry 3BD9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 85PRO 346
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3BD9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
102 111Right-handed alpha
Helix 2
2
A
128 134Right-handed alpha
Helix 3
3
A
135 141Right-handed alpha
Helix 4
4
A
157 161Right-handed 310
Helix 5
5
A
164 173Right-handed alpha
Helix 6
6
A
184 203Right-handed alpha
Helix 7
7
A
209 215Right-handed alpha
Helix 8
8
A
226 232Right-handed alpha
Helix 9
9
A
233 243Right-handed alpha
Helix 10
10
A
246 248Right-handed 310
Helix 11
11
A
255 261Right-handed alpha
Helix 12
12
A
261 273Right-handed alpha
Helix 13
13
A
280 282Right-handed 310
Helix 14
14
A
317 340Right-handed alpha
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There are 3 sheets in PDB entry 3BD9. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
145 146anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 118first strand
Strand 2
A
151 155parallel
Strand 3
A
93 97parallel
Strand 4
A
177 182parallel
Strand 5
A
250 254parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 287first strand
Strand 2
A
292 296anti-parallel
Strand 3
A
302 303anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il