Analysis of interatomic Contacts of Structural Units in PDB entry:
3BDB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BDB entry

There are 6 chains in PDB entry 3BDB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 3CYS 128
B
 ILE 3CYS 128
C
 ILE 3CYS 128
D
 ILE 3CYS 128
E
 ILE 3CYS 128
F
 ILE 3CYS 128
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 3BDB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 31Right-handed 310
Helix 2
2
B
28 30Right-handed 310
Helix 3
3
B
84 88Right-handed 310
Helix 4
4
C
28 30Right-handed 310
Helix 5
5
D
84 88Right-handed 310
Helix 6
6
E
84 88Right-handed 310
Helix 7
7
F
28 30Right-handed 310
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There are 14 sheets in PDB entry 3BDB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
101 109parallel
Strand 3
A
89 96anti-parallel
Strand 4
A
33 37anti-parallel
Strand 5
A
44 49anti-parallel
Strand 6
A
56 58anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
76 81anti-parallel
Strand 3
A
67 71anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 11first strand
Strand 2
B
100 111parallel
Strand 3
B
90 97anti-parallel
Strand 4
B
32 37anti-parallel
Strand 5
B
45 49anti-parallel
Strand 6
B
56 58anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 19first strand
Strand 2
B
76 81anti-parallel
Strand 3
B
67 71anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
7 11first strand
Strand 2
C
101 111parallel
Strand 3
C
90 96anti-parallel
Strand 4
C
32 37anti-parallel
Strand 5
C
44 49anti-parallel
Strand 6
C
56 58anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 19first strand
Strand 2
C
76 81anti-parallel
Strand 3
C
67 71anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
7 11first strand
Strand 2
D
107 111parallel
Strand 3
D
89 96anti-parallel
Strand 4
D
32 36anti-parallel
Strand 5
D
44 49anti-parallel
Strand 6
D
56 58anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
7 11first strand
Strand 2
D
107 111parallel
Strand 3
D
89 96anti-parallel
Strand 4
D
101 103anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
17 19first strand
Strand 2
D
76 80anti-parallel
Strand 3
D
67 71anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
7 10first strand
Strand 2
E
101 110parallel
Strand 3
E
89 96anti-parallel
Strand 4
E
35 37anti-parallel
Strand 5
E
44 45anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
17 19first strand
Strand 2
E
76 80anti-parallel
Strand 3
E
67 71anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
47 49first strand
Strand 2
E
56 58anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
7 10first strand
Strand 2
F
100 110parallel
Strand 3
F
89 97anti-parallel
Strand 4
F
32 38anti-parallel
Strand 5
F
44 49anti-parallel
Strand 6
F
56 58anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
17 19first strand
Strand 2
F
76 80anti-parallel
Strand 3
F
67 71anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il