Analysis of interatomic Contacts of Structural Units in PDB entry:
3BDI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BDI entry

There is 1 chain in PDB entry 3BDI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0LEU 206
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3BDI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 45Right-handed 310
Helix 2
2
A
46 53Right-handed alpha
Helix 3
3
A
81 96Right-handed alpha
Helix 4
4
A
107 120Right-handed alpha
Helix 5
5
A
135 137Right-handed 310
Helix 6
6
A
138 143Right-handed alpha
Helix 7
7
A
161 172Right-handed alpha
Helix 8
8
A
186 191Right-handed alpha
Helix 9
9
A
191 205Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3BDI.

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 10first strand
Strand 2
A
13 20anti-parallel
Strand 3
A
56 61anti-parallel
Strand 4
A
27 32parallel
Strand 5
A
101 106parallel
Strand 6
A
124 130parallel
Strand 7
A
149 154parallel
Strand 8
A
176 180parallel
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