Analysis of interatomic Contacts of Structural Units in PDB entry:
3BDL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BDL entry

There is 1 chain in PDB entry 3BDL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 314ALA 860
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3BDL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
358 362Right-handed 310
Helix 2
2
A
366 371Right-handed alpha
Helix 3
3
A
373 386Right-handed alpha
Helix 4
4
A
425 432Right-handed alpha
Helix 5
5
A
450 464Right-handed alpha
Helix 6
6
A
466 470Right-handed 310
Helix 7
7
A
485 499Right-handed alpha
Helix 8
8
A
552 565Right-handed alpha
Helix 9
9
A
593 600Right-handed alpha
Helix 10
10
A
607 610Right-handed 310
Helix 11
11
A
614 629Right-handed alpha
Helix 12
12
A
630 634Right-handed 310
Helix 13
13
A
678 696Right-handed alpha
Helix 14
14
A
748 750Right-handed 310
Helix 15
15
A
756 760Right-handed 310
Helix 16
16
A
781 797Right-handed alpha
Helix 17
17
A
825 833Right-handed alpha
Helix 18
18
A
843 845Right-handed 310
Helix 19
19
A
846 859Right-handed alpha
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There are 9 sheets in PDB entry 3BDL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 424first strand
Strand 2
A
413 420anti-parallel
Strand 3
A
389 398anti-parallel
Strand 4
A
317 326anti-parallel
Strand 5
A
330 334anti-parallel
Strand 6
A
340 345anti-parallel
Strand 7
A
413 420parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 349first strand
Strand 2
A
436 437anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
480 481first strand
Strand 2
A
524 530parallel
Strand 3
A
514 519anti-parallel
Strand 4
A
501 509anti-parallel
Strand 5
A
568 576anti-parallel
Strand 6
A
582 588anti-parallel
Strand 7
A
591 592anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
480 481first strand
Strand 2
A
524 530parallel
Strand 3
A
582 588parallel
Strand 4
A
591 592anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
533 534first strand
Strand 2
A
604 605anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
540 542first strand
Strand 2
A
545 547anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
658 665first strand
Strand 2
A
670 675anti-parallel
Strand 3
A
769 773anti-parallel
Strand 4
A
814 819parallel
Strand 5
A
799 807anti-parallel
Strand 6
A
658 665anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
744 747first strand
Strand 2
A
733 738anti-parallel
Strand 3
A
720 730anti-parallel
Strand 4
A
710 714anti-parallel
Strand 5
A
752 753anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
776 777first strand
Strand 2
A
837 838anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il