Analysis of interatomic Contacts of Structural Units in PDB entry:
3BDN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BDN entry

There are 4 chains in PDB entry 3BDN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 A 2 T 20
D
 A 22 T 40
A
 SER 1GLY 236
B
 SER 1GLY 236
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 3BDN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 26Right-handed alpha
Helix 2
2
A
33 41Right-handed alpha
Helix 3
3
A
43 51Right-handed alpha
Helix 4
4
A
58 65Right-handed alpha
Helix 5
5
A
72 76Right-handed 310
Helix 6
6
A
77 93Right-handed alpha
Helix 7
7
B
8 30Right-handed alpha
Helix 8
8
B
32 39Right-handed alpha
Helix 9
9
B
47 53Right-handed alpha
Helix 10
10
B
58 69Right-handed alpha
Helix 11
11
B
77 90Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 3BDN. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 144first strand
Strand 2
A
165 168anti-parallel
Strand 3
A
220 227anti-parallel
Strand 4
A
179 183anti-parallel
Strand 5
A
192 195anti-parallel
Strand 6
A
202 204anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 144first strand
Strand 2
B
165 167anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 204first strand
Strand 2
B
188 196anti-parallel
Strand 3
B
179 184anti-parallel
Strand 4
B
220 223anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il