Analysis of interatomic Contacts of Structural Units in PDB entry:
3BDU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BDU entry

There are 7 chains in PDB entry 3BDU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LYS 54
B
 SER 2GLY 53
C
 SER 2GLY 53
D
 SER 2GLY 53
E
 SER 2LYS 54
F
 SER 2GLY 53
G
 SER 2GLY 53
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 3BDU

There are 7 sheets in PDB entry 3BDU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 18first strand
Strand 2
A
4 9anti-parallel
Strand 3
A
47 52anti-parallel
Strand 4
C
39 42anti-parallel
Strand 5
C
30 33anti-parallel
Strand 6
C
22 23anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
30 33anti-parallel
Strand 3
A
39 42anti-parallel
Strand 4
E
47 52anti-parallel
Strand 5
E
5 9anti-parallel
Strand 6
E
14 17anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 18first strand
Strand 2
B
4 9anti-parallel
Strand 3
B
47 52anti-parallel
Strand 4
D
39 42anti-parallel
Strand 5
D
30 33anti-parallel
Strand 6
D
22 23anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 23first strand
Strand 2
B
30 33anti-parallel
Strand 3
B
39 42anti-parallel
Strand 4
G
47 53anti-parallel
Strand 5
G
4 9anti-parallel
Strand 6
G
14 18anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 18first strand
Strand 2
C
4 9anti-parallel
Strand 3
C
47 52anti-parallel
Strand 4
G
39 42anti-parallel
Strand 5
G
30 33anti-parallel
Strand 6
G
22 23anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
14 17first strand
Strand 2
D
5 9anti-parallel
Strand 3
D
47 52anti-parallel
Strand 4
F
39 42anti-parallel
Strand 5
F
30 33anti-parallel
Strand 6
F
22 23anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
22 23first strand
Strand 2
E
30 33anti-parallel
Strand 3
E
39 42anti-parallel
Strand 4
F
47 52anti-parallel
Strand 5
F
5 9anti-parallel
Strand 6
F
14 17anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il