Analysis of interatomic Contacts of Structural Units in PDB entry:
3BDV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BDV entry

There are 2 chains in PDB entry 3BDV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0ARG 190
B
 THR 4PRO 188
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3BDV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 15Right-handed alpha
Helix 2
2
A
32 41Right-handed alpha
Helix 3
3
A
56 70Right-handed alpha
Helix 4
4
A
81 93Right-handed alpha
Helix 5
5
A
108 113Right-handed 310
Helix 6
6
A
139 151Right-handed alpha
Helix 7
7
A
164 168Right-handed 310
Helix 8
8
A
172 185Right-handed alpha
Helix 9
9
B
4 15Right-handed alpha
Helix 10
10
B
32 41Right-handed alpha
Helix 11
11
B
56 70Right-handed alpha
Helix 12
12
B
81 93Right-handed alpha
Helix 13
13
B
108 113Right-handed 310
Helix 14
14
B
139 151Right-handed alpha
Helix 15
15
B
164 168Right-handed 310
Helix 16
16
B
172 185Right-handed alpha
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There are 2 sheets in PDB entry 3BDV. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 46first strand
Strand 2
A
18 22parallel
Strand 3
A
75 80parallel
Strand 4
A
98 104parallel
Strand 5
A
127 131parallel
Strand 6
A
153 156parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 46first strand
Strand 2
B
18 22parallel
Strand 3
B
75 80parallel
Strand 4
B
98 104parallel
Strand 5
B
127 131parallel
Strand 6
B
153 156parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il