Analysis of interatomic Contacts of Structural Units in PDB entry:
3BDW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BDW entry

There are 4 chains in PDB entry 3BDW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 57ILE 179
B
 ALA 113LYS 232
C
 CYS 58ILE 179
D
 ALA 113LYS 232
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3BDW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
81 92Right-handed alpha
Helix 2
2
A
101 109Right-handed 310
Helix 3
3
A
141 147Right-handed 310
Helix 4
4
B
139 150Right-handed alpha
Helix 5
5
B
159 170Right-handed alpha
Helix 6
6
C
81 92Right-handed alpha
Helix 7
7
C
101 109Right-handed 310
Helix 8
8
C
141 147Right-handed 310
Helix 9
9
D
139 150Right-handed alpha
Helix 10
10
D
159 170Right-handed alpha
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There are 10 sheets in PDB entry 3BDW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 68first strand
Strand 2
A
71 75anti-parallel
Strand 3
A
171 176anti-parallel
Strand 4
A
95 96anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 68first strand
Strand 2
A
71 75anti-parallel
Strand 3
A
171 176anti-parallel
Strand 4
A
115 116parallel
Strand 5
A
152 156anti-parallel
Strand 6
A
160 164anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 122first strand
Strand 2
A
127 130anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 125first strand
Strand 2
B
130 138anti-parallel
Strand 3
B
225 230anti-parallel
Strand 4
B
153 154anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 188first strand
Strand 2
B
172 178anti-parallel
Strand 3
B
208 212anti-parallel
Strand 4
B
216 219anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 68first strand
Strand 2
C
71 75anti-parallel
Strand 3
C
171 176anti-parallel
Strand 4
C
95 96anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 68first strand
Strand 2
C
71 75anti-parallel
Strand 3
C
171 176anti-parallel
Strand 4
C
115 116parallel
Strand 5
C
152 156anti-parallel
Strand 6
C
160 164anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
119 122first strand
Strand 2
C
127 130anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
124 125first strand
Strand 2
D
130 138anti-parallel
Strand 3
D
225 230anti-parallel
Strand 4
D
153 154anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
187 188first strand
Strand 2
D
172 178anti-parallel
Strand 3
D
208 212anti-parallel
Strand 4
D
216 219anti-parallel
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