Analysis of interatomic Contacts of Structural Units in PDB entry:
3BE5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3BE5 entry

There are 4 chains in PDB entry 3BE5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 19	PRO 312
B	GLU 19	PRO 312
C	GLU 19	PRO 312
D	GLU 19	PRO 312

There are 64 helices in PDB entry 3BE5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	49	57	Right-handed alpha
Helix 2	2	A	77	83	Right-handed alpha
Helix 3	3	A	85	89	Right-handed 310
Helix 4	4	A	100	107	Right-handed alpha
Helix 5	5	A	121	126	Right-handed alpha
Helix 6	6	A	139	153	Right-handed alpha
Helix 7	7	A	154	176	Right-handed alpha
Helix 8	8	A	177	181	Right-handed 310
Helix 9	9	A	199	209	Right-handed alpha
Helix 10	10	A	214	219	Right-handed alpha
Helix 11	11	A	229	237	Right-handed 310
Helix 12	12	A	252	264	Right-handed alpha
Helix 13	13	A	266	270	Right-handed 310
Helix 14	14	A	271	276	Right-handed alpha
Helix 15	15	A	284	289	Right-handed alpha
Helix 16	16	A	291	308	Right-handed alpha
Helix 17	17	B	49	56	Right-handed alpha
Helix 18	18	B	77	83	Right-handed alpha
Helix 19	19	B	85	89	Right-handed 310
Helix 20	20	B	100	107	Right-handed alpha
Helix 21	21	B	121	127	Right-handed alpha
Helix 22	22	B	139	153	Right-handed alpha
Helix 23	23	B	154	176	Right-handed alpha
Helix 24	24	B	177	181	Right-handed 310
Helix 25	25	B	199	209	Right-handed alpha
Helix 26	26	B	214	220	Right-handed alpha
Helix 27	27	B	229	237	Right-handed 310
Helix 28	28	B	252	264	Right-handed alpha
Helix 29	29	B	266	271	Right-handed alpha
Helix 30	30	B	271	276	Right-handed alpha
Helix 31	31	B	284	289	Right-handed alpha
Helix 32	32	B	291	308	Right-handed alpha
Helix 33	33	C	49	56	Right-handed alpha
Helix 34	34	C	77	83	Right-handed alpha
Helix 35	35	C	85	89	Right-handed 310
Helix 36	36	C	100	108	Right-handed alpha
Helix 37	37	C	121	127	Right-handed alpha
Helix 38	38	C	139	153	Right-handed alpha
Helix 39	39	C	154	176	Right-handed alpha
Helix 40	40	C	177	181	Right-handed 310
Helix 41	41	C	199	210	Right-handed alpha
Helix 42	42	C	214	219	Right-handed alpha
Helix 43	43	C	229	237	Right-handed 310
Helix 44	44	C	252	264	Right-handed alpha
Helix 45	45	C	266	270	Right-handed 310
Helix 46	46	C	271	276	Right-handed alpha
Helix 47	47	C	284	288	Right-handed alpha
Helix 48	48	C	291	308	Right-handed alpha
Helix 49	49	D	49	56	Right-handed alpha
Helix 50	50	D	77	83	Right-handed alpha
Helix 51	51	D	85	89	Right-handed 310
Helix 52	52	D	100	108	Right-handed alpha
Helix 53	53	D	121	126	Right-handed alpha
Helix 54	54	D	139	153	Right-handed alpha
Helix 55	55	D	154	176	Right-handed alpha
Helix 56	56	D	177	181	Right-handed 310
Helix 57	57	D	199	209	Right-handed alpha
Helix 58	58	D	214	220	Right-handed alpha
Helix 59	59	D	229	237	Right-handed 310
Helix 60	60	D	252	262	Right-handed alpha
Helix 61	61	D	266	270	Right-handed 310
Helix 62	62	D	271	276	Right-handed alpha
Helix 63	63	D	284	289	Right-handed alpha
Helix 64	64	D	291	308	Right-handed alpha

There are 20 sheets in PDB entry 3BE5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	25	first strand
Strand 2	A	31	35	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	93	first strand
Strand 2	A	62	63	parallel
Strand 3	A	41	43	parallel
Strand 4	A	111	114	parallel
Strand 5	A	131	133	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	67	first strand
Strand 2	A	73	74	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	186	first strand
Strand 2	A	240	245	parallel
Strand 3	A	279	283	parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	189	first strand
Strand 2	A	192	196	anti-parallel
Strand 3	A	225	228	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	25	first strand
Strand 2	B	31	35	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	93	first strand
Strand 2	B	62	63	parallel
Strand 3	B	41	43	parallel
Strand 4	B	111	114	parallel
Strand 5	B	131	133	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	67	first strand
Strand 2	B	73	74	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	185	first strand
Strand 2	B	240	245	parallel
Strand 3	B	279	283	parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	189	first strand
Strand 2	B	192	196	anti-parallel
Strand 3	B	225	228	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	25	first strand
Strand 2	C	31	35	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	93	first strand
Strand 2	C	62	63	parallel
Strand 3	C	41	43	parallel
Strand 4	C	111	114	parallel
Strand 5	C	131	133	parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	67	first strand
Strand 2	C	73	74	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	185	first strand
Strand 2	C	240	245	parallel
Strand 3	C	279	283	parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	189	first strand
Strand 2	C	192	196	anti-parallel
Strand 3	C	225	228	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	25	first strand
Strand 2	D	31	35	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	93	first strand
Strand 2	D	62	63	parallel
Strand 3	D	41	43	parallel
Strand 4	D	111	114	parallel
Strand 5	D	131	133	parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	67	first strand
Strand 2	D	73	74	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	185	first strand
Strand 2	D	240	245	parallel
Strand 3	D	279	283	parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	189	first strand
Strand 2	D	192	196	anti-parallel
Strand 3	D	225	228	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3BE5

Analysis of interatomic Contacts of Structural Units in PDB entry:
3BE5