Analysis of interatomic Contacts of Structural Units in PDB entry:
3BES


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BES entry

There are 2 chains in PDB entry 3BES (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 MET 0SER 132
R
 THR 17ASP 266
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3BES. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
L
1 15Right-handed alpha
Helix 2
2
L
19 24Right-handed 310
Helix 3
3
L
29 36Right-handed alpha
Helix 4
4
L
38 59Right-handed alpha
Helix 5
5
L
66 81Right-handed alpha
Helix 6
6
L
85 98Right-handed alpha
Helix 7
7
L
102 121Right-handed alpha
Helix 8
8
L
122 126Right-handed 310
Helix 9
9
R
94 99Right-handed alpha
Helix 10
10
R
136 140Right-handed 310
Helix 11
11
R
164 168Right-handed 310
Helix 12
12
R
220 222Right-handed 310
Helix 13
13
R
223 239Right-handed alpha
Helix 14
14
R
240 264Right-handed alpha
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There are 5 sheets in PDB entry 3BES. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
18 26first strand
Strand 2
R
29 36anti-parallel
Strand 3
R
62 65anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
53 59first strand
Strand 2
R
40 46anti-parallel
Strand 3
R
77 83anti-parallel
Strand 4
R
86 92anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
105 111first strand
Strand 2
R
114 120anti-parallel
Strand 3
R
172 177anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
123 126first strand
Strand 2
R
129 132anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
159 162first strand
Strand 2
R
145 152anti-parallel
Strand 3
R
183 190anti-parallel
Strand 4
R
205 207anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il