Analysis of interatomic Contacts of Structural Units in PDB entry:
3BF0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3BF0 entry

There are 4 chains in PDB entry 3BF0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 56	TYR 549
B	ARG 56	TYR 549
C	ARG 56	VAL 551
D	ARG 56	TYR 549

There are 82 helices in PDB entry 3BF0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	97	110	Right-handed alpha
Helix 2	2	A	127	144	Right-handed alpha
Helix 3	3	A	157	164	Right-handed alpha
Helix 4	4	A	189	196	Right-handed alpha
Helix 5	5	A	209	211	Right-handed 310
Helix 6	6	A	212	217	Right-handed alpha
Helix 7	7	A	221	248	Right-handed alpha
Helix 8	8	A	250	255	Right-handed alpha
Helix 9	9	A	256	267	Right-handed alpha
Helix 10	10	A	271	279	Right-handed alpha
Helix 11	11	A	287	300	Right-handed alpha
Helix 12	12	A	349	362	Right-handed alpha
Helix 13	13	A	378	395	Right-handed alpha
Helix 14	14	A	409	414	Right-handed alpha
Helix 15	15	A	441	448	Right-handed alpha
Helix 16	16	A	458	462	Right-handed 310
Helix 17	17	A	470	496	Right-handed alpha
Helix 18	18	A	499	505	Right-handed alpha
Helix 19	19	A	514	520	Right-handed alpha
Helix 20	20	A	528	540	Right-handed alpha
Helix 21	21	B	97	109	Right-handed alpha
Helix 22	22	B	127	144	Right-handed alpha
Helix 23	23	B	157	164	Right-handed alpha
Helix 24	24	B	189	196	Right-handed alpha
Helix 25	25	B	209	211	Right-handed 310
Helix 26	26	B	212	217	Right-handed alpha
Helix 27	27	B	221	247	Right-handed alpha
Helix 28	28	B	250	255	Right-handed alpha
Helix 29	29	B	257	265	Right-handed alpha
Helix 30	30	B	271	279	Right-handed alpha
Helix 31	31	B	287	299	Right-handed alpha
Helix 32	32	B	349	362	Right-handed alpha
Helix 33	33	B	378	395	Right-handed alpha
Helix 34	34	B	409	414	Right-handed alpha
Helix 35	35	B	441	448	Right-handed alpha
Helix 36	36	B	458	462	Right-handed 310
Helix 37	37	B	470	496	Right-handed alpha
Helix 38	38	B	499	507	Right-handed alpha
Helix 39	39	B	514	520	Right-handed alpha
Helix 40	40	B	528	541	Right-handed alpha
Helix 41	41	C	97	110	Right-handed alpha
Helix 42	42	C	127	144	Right-handed alpha
Helix 43	43	C	157	164	Right-handed alpha
Helix 44	44	C	189	197	Right-handed alpha
Helix 45	45	C	209	211	Right-handed 310
Helix 46	46	C	212	217	Right-handed alpha
Helix 47	47	C	221	248	Right-handed alpha
Helix 48	48	C	250	255	Right-handed alpha
Helix 49	49	C	257	268	Right-handed alpha
Helix 50	50	C	271	279	Right-handed alpha
Helix 51	51	C	287	300	Right-handed alpha
Helix 52	52	C	314	316	Right-handed 310
Helix 53	53	C	349	362	Right-handed alpha
Helix 54	54	C	378	395	Right-handed alpha
Helix 55	55	C	409	414	Right-handed alpha
Helix 56	56	C	441	448	Right-handed alpha
Helix 57	57	C	458	462	Right-handed 310
Helix 58	58	C	470	496	Right-handed alpha
Helix 59	59	C	499	505	Right-handed alpha
Helix 60	60	C	514	520	Right-handed alpha
Helix 61	61	C	528	539	Right-handed alpha
Helix 62	62	D	97	110	Right-handed alpha
Helix 63	63	D	127	144	Right-handed alpha
Helix 64	64	D	156	164	Right-handed alpha
Helix 65	65	D	189	196	Right-handed alpha
Helix 66	66	D	209	211	Right-handed 310
Helix 67	67	D	212	217	Right-handed alpha
Helix 68	68	D	221	248	Right-handed alpha
Helix 69	69	D	250	255	Right-handed alpha
Helix 70	70	D	257	267	Right-handed alpha
Helix 71	71	D	271	279	Right-handed alpha
Helix 72	72	D	287	300	Right-handed alpha
Helix 73	73	D	349	362	Right-handed alpha
Helix 74	74	D	378	395	Right-handed alpha
Helix 75	75	D	409	414	Right-handed alpha
Helix 76	76	D	441	448	Right-handed alpha
Helix 77	77	D	458	462	Right-handed 310
Helix 78	78	D	470	496	Right-handed alpha
Helix 79	79	D	499	504	Right-handed alpha
Helix 80	80	D	505	507	Right-handed 310
Helix 81	81	D	514	520	Right-handed alpha
Helix 82	82	D	528	540	Right-handed alpha

There are 33 sheets in PDB entry 3BF0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	285	first strand
Strand 2	A	168	171	parallel
Strand 3	A	148	152	parallel
Strand 4	A	116	119	parallel
Strand 5	A	58	61	parallel
Strand 6	A	310	312	parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	96	first strand
Strand 2	A	64	68	parallel
Strand 3	A	122	125	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	156	first strand
Strand 2	A	177	178	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	188	first strand
Strand 2	C	451	453	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	205	first strand
Strand 2	A	434	440	anti-parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	348	first strand
Strand 2	A	327	338	parallel
Strand 3	A	365	377	parallel
Strand 4	A	399	408	parallel
Strand 5	A	420	423	parallel
Strand 6	A	525	526	parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	513	first strand
Strand 2	A	428	430	anti-parallel
Strand 3	A	399	408	parallel
Strand 4	A	365	377	parallel
Strand 5	A	327	338	parallel
Strand 6	A	545	548	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	453	first strand
Strand 2	B	186	188	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	285	first strand
Strand 2	B	168	171	parallel
Strand 3	B	148	152	parallel
Strand 4	B	116	119	parallel
Strand 5	B	58	61	parallel
Strand 6	B	310	312	parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	96	first strand
Strand 2	B	65	68	parallel
Strand 3	B	123	125	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	156	first strand
Strand 2	B	177	178	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	205	first strand
Strand 2	B	434	440	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	302	first strand
Strand 2	B	307	308	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	513	first strand
Strand 2	B	428	430	anti-parallel
Strand 3	B	399	408	parallel
Strand 4	B	420	423	parallel
Strand 5	B	525	526	parallel

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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	513	first strand
Strand 2	B	428	430	anti-parallel
Strand 3	B	399	408	parallel
Strand 4	B	365	374	parallel
Strand 5	B	327	334	parallel
Strand 6	B	545	548	parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	338	first strand
Strand 2	B	346	348	parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	451	453	first strand
Strand 2	D	186	188	anti-parallel

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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	285	first strand
Strand 2	C	168	171	parallel
Strand 3	C	148	152	parallel
Strand 4	C	113	119	parallel
Strand 5	C	57	61	parallel
Strand 6	C	310	312	parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	96	first strand
Strand 2	C	65	68	parallel
Strand 3	C	123	125	parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	156	first strand
Strand 2	C	177	178	parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	188	first strand
Strand 2	D	451	453	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	205	first strand
Strand 2	C	434	440	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	302	first strand
Strand 2	C	307	308	anti-parallel

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There are 6 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	525	526	first strand
Strand 2	C	420	423	parallel
Strand 3	C	399	407	parallel
Strand 4	C	365	374	parallel
Strand 5	C	327	334	parallel
Strand 6	C	545	548	parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	338	first strand
Strand 2	C	347	348	parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	428	430	first strand
Strand 2	C	511	513	anti-parallel

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There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	284	285	first strand
Strand 2	D	168	171	parallel
Strand 3	D	148	152	parallel
Strand 4	D	113	119	parallel
Strand 5	D	57	61	parallel
Strand 6	D	310	312	parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	96	first strand
Strand 2	D	65	68	parallel
Strand 3	D	123	125	parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	205	first strand
Strand 2	D	434	440	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	301	302	first strand
Strand 2	D	307	308	anti-parallel

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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	511	513	first strand
Strand 2	D	428	430	anti-parallel
Strand 3	D	399	408	parallel
Strand 4	D	420	423	parallel
Strand 5	D	525	526	parallel

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There are 6 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	511	513	first strand
Strand 2	D	428	430	anti-parallel
Strand 3	D	399	408	parallel
Strand 4	D	365	374	parallel
Strand 5	D	327	334	parallel
Strand 6	D	546	548	parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	337	338	first strand
Strand 2	D	347	348	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3BF0

Analysis of interatomic Contacts of Structural Units in PDB entry:
3BF0