Analysis of interatomic Contacts of Structural Units in PDB entry:
3BF5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BF5 entry

There are 2 chains in PDB entry 3BF5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0PHE 283
B
 MSE 1MSE 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3BF5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 50Right-handed alpha
Helix 2
2
A
65 75Right-handed alpha
Helix 3
3
A
109 114Right-handed alpha
Helix 4
4
A
132 140Right-handed alpha
Helix 5
5
A
148 155Right-handed 310
Helix 6
6
A
156 167Right-handed alpha
Helix 7
7
A
174 185Right-handed alpha
Helix 8
8
A
224 239Right-handed alpha
Helix 9
9
A
242 261Right-handed alpha
Helix 10
10
A
268 283Right-handed alpha
Helix 11
11
B
38 50Right-handed alpha
Helix 12
12
B
65 75Right-handed alpha
Helix 13
13
B
108 113Right-handed 310
Helix 14
14
B
133 140Right-handed alpha
Helix 15
15
B
148 155Right-handed 310
Helix 16
16
B
156 167Right-handed alpha
Helix 17
17
B
174 185Right-handed alpha
Helix 18
18
B
198 200Right-handed 310
Helix 19
19
B
224 239Right-handed alpha
Helix 20
20
B
242 261Right-handed alpha
Helix 21
21
B
268 281Right-handed alpha
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There are 4 sheets in PDB entry 3BF5. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 85first strand
Strand 2
A
55 61parallel
Strand 3
A
2 7parallel
Strand 4
A
122 127parallel
Strand 5
A
143 146parallel
Strand 6
A
169 173parallel
Strand 7
A
193 197parallel
Strand 8
A
201 206anti-parallel
Strand 9
A
209 214anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 37first strand
Strand 2
A
11 17anti-parallel
Strand 3
A
92 97parallel
Strand 4
A
102 107anti-parallel
Strand 5
B
25 28parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
B
102 107parallel
Strand 3
B
92 97anti-parallel
Strand 4
B
11 17parallel
Strand 5
B
31 37anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 85first strand
Strand 2
B
54 61parallel
Strand 3
B
2 7parallel
Strand 4
B
122 127parallel
Strand 5
B
143 146parallel
Strand 6
B
169 173parallel
Strand 7
B
193 196parallel
Strand 8
B
202 206anti-parallel
Strand 9
B
209 213anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il