Analysis of interatomic Contacts of Structural Units in PDB entry:
3BF8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BF8 entry

There are 2 chains in PDB entry 3BF8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 255
B
 MET 1ASP 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3BF8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 40Right-handed alpha
Helix 2
2
A
63 79Right-handed alpha
Helix 3
3
A
89 102Right-handed alpha
Helix 4
4
A
124 137Right-handed alpha
Helix 5
5
A
141 150Right-handed alpha
Helix 6
6
A
155 164Right-handed alpha
Helix 7
7
A
174 181Right-handed alpha
Helix 8
8
A
181 187Right-handed alpha
Helix 9
9
A
210 212Right-handed 310
Helix 10
10
A
213 221Right-handed alpha
Helix 11
11
A
235 240Right-handed alpha
Helix 12
12
A
240 254Right-handed alpha
Helix 13
13
B
28 31Right-handed 310
Helix 14
14
B
32 40Right-handed alpha
Helix 15
15
B
63 78Right-handed alpha
Helix 16
16
B
89 102Right-handed alpha
Helix 17
17
B
124 137Right-handed alpha
Helix 18
18
B
141 150Right-handed alpha
Helix 19
19
B
155 164Right-handed alpha
Helix 20
20
B
174 187Right-handed alpha
Helix 21
21
B
210 212Right-handed 310
Helix 22
22
B
213 221Right-handed alpha
Helix 23
23
B
235 240Right-handed alpha
Helix 24
24
B
240 254Right-handed alpha
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There are 4 sheets in PDB entry 3BF8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 8first strand
Strand 2
A
45 48anti-parallel
Strand 3
A
19 22parallel
Strand 4
A
83 88parallel
Strand 5
A
106 112parallel
Strand 6
A
198 201parallel
Strand 7
A
224 226parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 167first strand
Strand 2
A
170 171anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 8first strand
Strand 2
B
45 48anti-parallel
Strand 3
B
19 22parallel
Strand 4
B
83 88parallel
Strand 5
B
106 112parallel
Strand 6
B
198 201parallel
Strand 7
B
224 226parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 167first strand
Strand 2
B
170 171anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il