Analysis of interatomic Contacts of Structural Units in PDB entry:
3BFK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BFK entry

There are 5 chains in PDB entry 3BFK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 6GLN 178
B
 TYR 7ASN 185
C
 TYR 7ASN 185
D
 ASP 6GLN 178
E
 ASP 6VAL 176
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 3BFK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 34Right-handed alpha
Helix 2
2
A
77 83Right-handed alpha
Helix 3
3
A
96 102Right-handed alpha
Helix 4
4
A
102 114Right-handed alpha
Helix 5
5
A
129 133Right-handed 310
Helix 6
6
A
136 147Right-handed alpha
Helix 7
7
A
161 178Right-handed alpha
Helix 8
8
B
23 34Right-handed alpha
Helix 9
9
B
77 83Right-handed alpha
Helix 10
10
B
96 102Right-handed alpha
Helix 11
11
B
102 114Right-handed alpha
Helix 12
12
B
129 133Right-handed 310
Helix 13
13
B
136 147Right-handed alpha
Helix 14
14
B
161 184Right-handed alpha
Helix 15
15
C
23 34Right-handed alpha
Helix 16
16
C
56 58Right-handed 310
Helix 17
17
C
77 83Right-handed alpha
Helix 18
18
C
96 102Right-handed alpha
Helix 19
19
C
102 114Right-handed alpha
Helix 20
20
C
129 133Right-handed 310
Helix 21
21
C
136 148Right-handed alpha
Helix 22
22
C
161 184Right-handed alpha
Helix 23
23
D
23 34Right-handed alpha
Helix 24
24
D
76 83Right-handed alpha
Helix 25
25
D
96 102Right-handed alpha
Helix 26
26
D
102 114Right-handed alpha
Helix 27
27
D
129 133Right-handed 310
Helix 28
28
D
136 148Right-handed alpha
Helix 29
29
D
161 178Right-handed alpha
Helix 30
30
E
23 34Right-handed alpha
Helix 31
31
E
77 83Right-handed alpha
Helix 32
32
E
96 102Right-handed alpha
Helix 33
33
E
102 114Right-handed alpha
Helix 34
34
E
129 133Right-handed 310
Helix 35
35
E
136 148Right-handed alpha
Helix 36
36
E
161 176Right-handed alpha
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There are 5 sheets in PDB entry 3BFK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 54first strand
Strand 2
A
60 68anti-parallel
Strand 3
A
10 17parallel
Strand 4
A
87 93parallel
Strand 5
A
119 125parallel
Strand 6
A
150 153parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 54first strand
Strand 2
B
60 68anti-parallel
Strand 3
B
10 17parallel
Strand 4
B
87 93parallel
Strand 5
B
119 125parallel
Strand 6
B
150 153parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 54first strand
Strand 2
C
60 68anti-parallel
Strand 3
C
10 17parallel
Strand 4
C
87 93parallel
Strand 5
C
119 125parallel
Strand 6
C
150 153parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
46 54first strand
Strand 2
D
60 68anti-parallel
Strand 3
D
10 17parallel
Strand 4
D
87 93parallel
Strand 5
D
119 125parallel
Strand 6
D
150 153parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
46 53first strand
Strand 2
E
61 68anti-parallel
Strand 3
E
10 17parallel
Strand 4
E
85 93parallel
Strand 5
E
119 125parallel
Strand 6
E
150 153parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il