Analysis of interatomic Contacts of Structural Units in PDB entry:
3BFM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BFM entry

There is 1 chain in PDB entry 3BFM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4GLN 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 3BFM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 32Right-handed alpha
Helix 2
2
A
59 64Right-handed alpha
Helix 3
3
A
65 82Right-handed alpha
Helix 4
4
A
144 148Right-handed 310
Helix 5
5
A
154 175Right-handed alpha
Helix 6
6
A
177 189Right-handed alpha
Helix 7
7
A
226 231Right-handed 310
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There are 2 sheets in PDB entry 3BFM. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 15first strand
Strand 2
A
38 43parallel
Strand 3
A
47 54anti-parallel
Strand 4
A
122 129anti-parallel
Strand 5
A
101 110anti-parallel
Strand 6
A
95 98anti-parallel
Strand 7
A
88 90anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 198first strand
Strand 2
A
201 208anti-parallel
Strand 3
A
214 217anti-parallel
Strand 4
A
222 225anti-parallel
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