Analysis of interatomic Contacts of Structural Units in PDB entry:
3BGH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BGH entry

There are 2 chains in PDB entry 3BGH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 40MET 245
B
 LEU 42SER 242
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3BGH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
74 95Right-handed alpha
Helix 2
2
A
105 109Right-handed 310
Helix 3
3
A
110 117Right-handed alpha
Helix 4
4
A
206 230Right-handed alpha
Helix 5
5
A
231 245Right-handed alpha
Helix 6
6
B
74 95Right-handed alpha
Helix 7
7
B
110 117Right-handed alpha
Helix 8
8
B
206 230Right-handed alpha
Helix 9
9
B
231 242Right-handed alpha
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There are 4 sheets in PDB entry 3BGH. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 69first strand
Strand 2
A
119 135parallel
Strand 3
A
144 158anti-parallel
Strand 4
A
165 172anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 103first strand
Strand 2
A
59 63parallel
Strand 3
A
119 135parallel
Strand 4
A
144 158anti-parallel
Strand 5
A
177 182anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 103first strand
Strand 2
B
59 69parallel
Strand 3
B
119 135parallel
Strand 4
B
144 158anti-parallel
Strand 5
B
165 172anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 103first strand
Strand 2
B
59 69parallel
Strand 3
B
119 135parallel
Strand 4
B
144 158anti-parallel
Strand 5
B
177 182anti-parallel
Strand 6
B
202 203anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il