Analysis of interatomic Contacts of Structural Units in PDB entry:
3BGV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BGV entry

There are 4 chains in PDB entry 3BGV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 4GLN 312
B
 ILE 5GLN 312
C
 ILE 5GLN 312
D
 ILE 5GLN 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 3BGV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 30Right-handed alpha
Helix 2
2
A
47 54Right-handed alpha
Helix 3
3
A
65 81Right-handed alpha
Helix 4
4
A
122 128Right-handed 310
Helix 5
5
A
129 142Right-handed alpha
Helix 6
6
A
156 165Right-handed alpha
Helix 7
7
A
210 218Right-handed alpha
Helix 8
8
A
219 221Right-handed 310
Helix 9
9
A
231 239Right-handed alpha
Helix 10
10
A
241 252Right-handed alpha
Helix 11
11
A
293 301Right-handed alpha
Helix 12
12
B
5 29Right-handed alpha
Helix 13
13
B
47 54Right-handed alpha
Helix 14
14
B
65 81Right-handed alpha
Helix 15
15
B
102 106Right-handed 310
Helix 16
16
B
122 128Right-handed 310
Helix 17
17
B
129 142Right-handed alpha
Helix 18
18
B
156 167Right-handed alpha
Helix 19
19
B
210 218Right-handed alpha
Helix 20
20
B
219 221Right-handed 310
Helix 21
21
B
231 239Right-handed alpha
Helix 22
22
B
241 252Right-handed alpha
Helix 23
23
B
293 301Right-handed alpha
Helix 24
24
C
5 29Right-handed alpha
Helix 25
25
C
47 55Right-handed alpha
Helix 26
26
C
65 81Right-handed alpha
Helix 27
27
C
122 128Right-handed 310
Helix 28
28
C
129 142Right-handed alpha
Helix 29
29
C
156 165Right-handed alpha
Helix 30
30
C
210 218Right-handed alpha
Helix 31
31
C
219 221Right-handed 310
Helix 32
32
C
231 239Right-handed alpha
Helix 33
33
C
241 252Right-handed alpha
Helix 34
34
C
293 301Right-handed alpha
Helix 35
35
D
5 30Right-handed alpha
Helix 36
36
D
47 54Right-handed alpha
Helix 37
37
D
65 81Right-handed alpha
Helix 38
38
D
102 106Right-handed 310
Helix 39
39
D
122 128Right-handed 310
Helix 40
40
D
129 142Right-handed alpha
Helix 41
41
D
156 166Right-handed alpha
Helix 42
42
D
210 220Right-handed alpha
Helix 43
43
D
231 240Right-handed alpha
Helix 44
44
D
241 252Right-handed alpha
Helix 45
45
D
293 301Right-handed alpha
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There are 8 sheets in PDB entry 3BGV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 95first strand
Strand 2
A
58 63parallel
Strand 3
A
36 40parallel
Strand 4
A
114 120parallel
Strand 5
A
144 155parallel
Strand 6
A
303 310anti-parallel
Strand 7
A
223 230anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 173first strand
Strand 2
A
177 181anti-parallel
Strand 3
A
193 198anti-parallel
Strand 4
A
205 207anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 95first strand
Strand 2
B
58 63parallel
Strand 3
B
36 40parallel
Strand 4
B
114 120parallel
Strand 5
B
144 155parallel
Strand 6
B
303 310anti-parallel
Strand 7
B
223 230anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 173first strand
Strand 2
B
177 181anti-parallel
Strand 3
B
193 198anti-parallel
Strand 4
B
203 207anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
90 95first strand
Strand 2
C
58 63parallel
Strand 3
C
36 40parallel
Strand 4
C
114 120parallel
Strand 5
C
144 155parallel
Strand 6
C
303 310anti-parallel
Strand 7
C
223 230anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
171 173first strand
Strand 2
C
177 181anti-parallel
Strand 3
C
193 198anti-parallel
Strand 4
C
205 207anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
90 95first strand
Strand 2
D
58 63parallel
Strand 3
D
36 40parallel
Strand 4
D
114 120parallel
Strand 5
D
144 155parallel
Strand 6
D
303 310anti-parallel
Strand 7
D
223 230anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
171 173first strand
Strand 2
D
177 181anti-parallel
Strand 3
D
193 198anti-parallel
Strand 4
D
206 207anti-parallel
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