Analysis of interatomic Contacts of Structural Units in PDB entry:
3BIJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BIJ entry

There are 3 chains in PDB entry 3BIJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2GLU 279
B
 PRO 2VAL 277
C
 PRO 2GLU 279
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3BIJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 43Right-handed alpha
Helix 2
2
A
53 55Right-handed 310
Helix 3
3
A
56 71Right-handed alpha
Helix 4
4
A
112 120Right-handed alpha
Helix 5
5
A
139 146Right-handed alpha
Helix 6
6
A
168 179Right-handed alpha
Helix 7
7
A
179 190Right-handed alpha
Helix 8
8
A
221 232Right-handed alpha
Helix 9
9
A
239 251Right-handed alpha
Helix 10
10
A
266 272Right-handed alpha
Helix 11
11
B
28 43Right-handed alpha
Helix 12
12
B
53 55Right-handed 310
Helix 13
13
B
56 71Right-handed alpha
Helix 14
14
B
112 120Right-handed alpha
Helix 15
15
B
139 147Right-handed alpha
Helix 16
16
B
168 179Right-handed alpha
Helix 17
17
B
179 190Right-handed alpha
Helix 18
18
B
194 198Right-handed 310
Helix 19
19
B
221 232Right-handed alpha
Helix 20
20
B
239 251Right-handed alpha
Helix 21
21
B
266 272Right-handed alpha
Helix 22
22
C
28 43Right-handed alpha
Helix 23
23
C
53 55Right-handed 310
Helix 24
24
C
56 71Right-handed alpha
Helix 25
25
C
112 120Right-handed alpha
Helix 26
26
C
139 146Right-handed alpha
Helix 27
27
C
168 179Right-handed alpha
Helix 28
28
C
179 188Right-handed alpha
Helix 29
29
C
194 198Right-handed 310
Helix 30
30
C
221 232Right-handed alpha
Helix 31
31
C
239 251Right-handed alpha
Helix 32
32
C
266 272Right-handed alpha
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There are 8 sheets in PDB entry 3BIJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 51first strand
Strand 2
A
4 10parallel
Strand 3
A
76 82parallel
Strand 4
A
127 133parallel
Strand 5
A
201 206parallel
Strand 6
A
258 263anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 89first strand
Strand 2
A
99 104anti-parallel
Strand 3
A
109 111anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 164first strand
Strand 2
A
215 216anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 51first strand
Strand 2
B
4 10parallel
Strand 3
B
76 82parallel
Strand 4
B
127 133parallel
Strand 5
B
201 206parallel
Strand 6
B
258 263anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 89first strand
Strand 2
B
99 104anti-parallel
Strand 3
B
109 111anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 164first strand
Strand 2
B
215 216anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 51first strand
Strand 2
C
4 10parallel
Strand 3
C
76 82parallel
Strand 4
C
127 133parallel
Strand 5
C
201 206parallel
Strand 6
C
258 263anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
85 89first strand
Strand 2
C
99 104anti-parallel
Strand 3
C
109 111anti-parallel
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