Analysis of interatomic Contacts of Structural Units in PDB entry:
3BIP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BIP entry

There are 2 chains in PDB entry 3BIP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 4PHE 447
B
 ASN 5ASN 448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3BIP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 22Right-handed alpha
Helix 2
2
A
23 25Right-handed 310
Helix 3
3
A
46 57Right-handed alpha
Helix 4
4
A
77 91Right-handed alpha
Helix 5
5
A
109 128Right-handed alpha
Helix 6
6
A
141 159Right-handed alpha
Helix 7
7
A
165 174Right-handed alpha
Helix 8
8
A
177 208Right-handed alpha
Helix 9
9
A
213 223Right-handed alpha
Helix 10
10
A
224 226Right-handed 310
Helix 11
11
A
227 240Right-handed alpha
Helix 12
12
A
249 251Right-handed 310
Helix 13
13
A
310 331Right-handed alpha
Helix 14
14
A
337 353Right-handed alpha
Helix 15
15
A
354 360Right-handed 310
Helix 16
16
A
374 378Right-handed 310
Helix 17
17
A
439 443Right-handed alpha
Helix 18
18
B
7 22Right-handed alpha
Helix 19
19
B
23 25Right-handed 310
Helix 20
20
B
46 57Right-handed alpha
Helix 21
22
B
86 92Right-handed 310
Helix 22
23
B
109 128Right-handed alpha
Helix 23
24
B
141 159Right-handed alpha
Helix 24
25
B
165 173Right-handed alpha
Helix 25
26
B
177 208Right-handed alpha
Helix 26
27
B
213 224Right-handed alpha
Helix 27
28
B
227 240Right-handed alpha
Helix 28
29
B
249 251Right-handed 310
Helix 29
30
B
310 331Right-handed alpha
Helix 30
31
B
337 353Right-handed alpha
Helix 31
32
B
354 360Right-handed 310
Helix 32
33
B
439 443Right-handed alpha
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There are 8 sheets in PDB entry 3BIP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 104first strand
Strand 2
A
71 76parallel
Strand 3
A
63 68anti-parallel
Strand 4
A
31 36anti-parallel
Strand 5
A
130 133parallel
Strand 6
A
161 164parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 255first strand
Strand 2
A
292 294anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 262first strand
Strand 2
A
284 290anti-parallel
Strand 3
A
301 307anti-parallel
Strand 4
A
444 445parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 367first strand
Strand 2
A
393 403anti-parallel
Strand 3
A
412 421anti-parallel
Strand 4
A
431 432anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 105first strand
Strand 2
B
71 77parallel
Strand 3
B
63 68anti-parallel
Strand 4
B
31 36anti-parallel
Strand 5
B
130 133parallel
Strand 6
B
161 164parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 255first strand
Strand 2
B
292 294anti-parallel
Strand 3
B
297 298anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 262first strand
Strand 2
B
284 290anti-parallel
Strand 3
B
301 307anti-parallel
Strand 4
B
444 445parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
365 367first strand
Strand 2
B
393 405anti-parallel
Strand 3
B
408 421anti-parallel
Strand 4
B
431 432anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il