Analysis of interatomic Contacts of Structural Units in PDB entry:
3BJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BJD entry

There are 3 chains in PDB entry 3BJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2VAL 327
B
 ASN 2VAL 327
C
 ASN 2VAL 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 3BJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 13Right-handed alpha
Helix 2
2
A
16 27Right-handed alpha
Helix 3
3
A
31 51Right-handed alpha
Helix 4
4
A
53 70Right-handed alpha
Helix 5
5
A
72 74Right-handed 310
Helix 6
6
A
75 94Right-handed alpha
Helix 7
7
A
104 118Right-handed alpha
Helix 8
8
A
124 133Right-handed alpha
Helix 9
9
A
136 152Right-handed alpha
Helix 10
10
A
153 164Right-handed alpha
Helix 11
11
A
167 182Right-handed alpha
Helix 12
12
A
186 189Right-handed 310
Helix 13
13
A
190 202Right-handed alpha
Helix 14
14
A
214 230Right-handed alpha
Helix 15
15
A
233 261Right-handed alpha
Helix 16
16
A
268 278Right-handed alpha
Helix 17
17
A
285 291Right-handed alpha
Helix 18
18
A
295 327Right-handed alpha
Helix 19
19
B
6 13Right-handed alpha
Helix 20
20
B
16 26Right-handed alpha
Helix 21
21
B
31 51Right-handed alpha
Helix 22
22
B
53 70Right-handed alpha
Helix 23
23
B
72 74Right-handed 310
Helix 24
24
B
75 94Right-handed alpha
Helix 25
25
B
104 120Right-handed alpha
Helix 26
26
B
121 123Right-handed 310
Helix 27
27
B
124 132Right-handed alpha
Helix 28
28
B
136 152Right-handed alpha
Helix 29
29
B
153 165Right-handed alpha
Helix 30
30
B
167 182Right-handed alpha
Helix 31
31
B
186 189Right-handed 310
Helix 32
32
B
190 202Right-handed alpha
Helix 33
33
B
214 230Right-handed alpha
Helix 34
34
B
233 245Right-handed alpha
Helix 35
35
B
251 261Right-handed alpha
Helix 36
36
B
268 273Right-handed alpha
Helix 37
37
B
279 284Right-handed 310
Helix 38
38
B
285 293Right-handed alpha
Helix 39
39
B
295 327Right-handed alpha
Helix 40
40
C
6 13Right-handed alpha
Helix 41
41
C
16 26Right-handed alpha
Helix 42
42
C
31 52Right-handed alpha
Helix 43
43
C
53 70Right-handed alpha
Helix 44
44
C
72 74Right-handed 310
Helix 45
45
C
75 94Right-handed alpha
Helix 46
46
C
104 120Right-handed alpha
Helix 47
47
C
121 123Right-handed 310
Helix 48
48
C
124 131Right-handed alpha
Helix 49
49
C
136 152Right-handed alpha
Helix 50
50
C
153 165Right-handed alpha
Helix 51
51
C
167 182Right-handed alpha
Helix 52
52
C
186 189Right-handed 310
Helix 53
53
C
190 202Right-handed alpha
Helix 54
54
C
214 230Right-handed alpha
Helix 55
55
C
233 245Right-handed alpha
Helix 56
56
C
250 261Right-handed alpha
Helix 57
57
C
268 273Right-handed alpha
Helix 58
58
C
279 284Right-handed 310
Helix 59
59
C
285 291Right-handed alpha
Helix 60
60
C
295 327Right-handed alpha
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There are no sheets in PDB entry 3BJD
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il