Analysis of interatomic Contacts of Structural Units in PDB entry:
3BJE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BJE entry

There are 2 chains in PDB entry 3BJE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 15ALA 341
B
 ASP 15ALA 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3BJE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 34Right-handed 310
Helix 2
2
A
45 52Right-handed alpha
Helix 3
3
A
88 104Right-handed alpha
Helix 4
4
A
129 132Right-handed 310
Helix 5
5
A
164 170Right-handed 310
Helix 6
6
A
177 191Right-handed alpha
Helix 7
7
A
192 196Right-handed 310
Helix 8
8
A
204 221Right-handed alpha
Helix 9
9
A
224 228Right-handed 310
Helix 10
10
A
243 247Right-handed 310
Helix 11
11
A
250 257Right-handed 310
Helix 12
12
A
261 269Right-handed alpha
Helix 13
13
A
286 298Right-handed alpha
Helix 14
14
A
320 341Right-handed alpha
Helix 15
15
B
30 34Right-handed 310
Helix 16
16
B
45 52Right-handed alpha
Helix 17
17
B
88 104Right-handed alpha
Helix 18
18
B
129 132Right-handed 310
Helix 19
19
B
164 170Right-handed 310
Helix 20
20
B
177 191Right-handed alpha
Helix 21
21
B
192 196Right-handed 310
Helix 22
22
B
204 221Right-handed alpha
Helix 23
23
B
224 228Right-handed 310
Helix 24
24
B
243 247Right-handed 310
Helix 25
25
B
250 257Right-handed 310
Helix 26
26
B
261 268Right-handed alpha
Helix 27
27
B
286 298Right-handed alpha
Helix 28
28
B
320 341Right-handed alpha
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There are 10 sheets in PDB entry 3BJE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 202first strand
Strand 2
A
153 161anti-parallel
Strand 3
A
231 238parallel
Strand 4
A
280 284parallel
Strand 5
A
134 143anti-parallel
Strand 6
A
37 41parallel
Strand 7
A
68 75first strand
Strand 8
A
61 65anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 202first strand
Strand 2
A
153 161anti-parallel
Strand 3
A
300 310anti-parallel
Strand 4
A
134 143parallel
Strand 5
A
37 41parallel
Strand 6
A
78 84parallel
Strand 7
A
68 75anti-parallel
Strand 8
A
61 65anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 317first strand
Strand 2
A
300 310anti-parallel
Strand 3
A
134 143parallel
Strand 4
A
37 41parallel
Strand 5
A
68 75first strand
Strand 6
A
61 65anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
111 112anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 273first strand
Strand 2
A
276 278anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 202first strand
Strand 2
B
153 161anti-parallel
Strand 3
B
231 238parallel
Strand 4
B
280 284parallel
Strand 5
B
134 143anti-parallel
Strand 6
B
37 41parallel
Strand 7
B
68 75first strand
Strand 8
B
61 65anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 202first strand
Strand 2
B
153 161anti-parallel
Strand 3
B
300 310anti-parallel
Strand 4
B
134 143parallel
Strand 5
B
37 41parallel
Strand 6
B
78 84parallel
Strand 7
B
68 75anti-parallel
Strand 8
B
61 65anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
316 317first strand
Strand 2
B
300 310anti-parallel
Strand 3
B
134 143parallel
Strand 4
B
37 41parallel
Strand 5
B
68 75first strand
Strand 6
B
61 65anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 106first strand
Strand 2
B
111 112anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 273first strand
Strand 2
B
276 278anti-parallel
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