Analysis of interatomic Contacts of Structural Units in PDB entry:
3BJU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3BJU entry

There are 4 chains in PDB entry 3BJU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 70	GLU 576
B	ASP 72	LYS 574
C	ASP 72	PRO 575
D	VAL 71	PRO 575

There are 73 helices in PDB entry 3BJU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	72	90	Right-handed alpha
Helix 2	2	A	104	113	Right-handed alpha
Helix 3	3	A	161	163	Right-handed 310
Helix 4	4	A	165	176	Right-handed alpha
Helix 5	5	A	222	229	Right-handed alpha
Helix 6	6	A	229	237	Right-handed alpha
Helix 7	7	A	237	261	Right-handed alpha
Helix 8	8	A	300	310	Right-handed alpha
Helix 9	9	A	346	367	Right-handed alpha
Helix 10	10	A	396	405	Right-handed alpha
Helix 11	11	A	410	414	Right-handed 310
Helix 12	12	A	416	430	Right-handed alpha
Helix 13	13	A	439	452	Right-handed alpha
Helix 14	14	A	453	456	Right-handed 310
Helix 15	15	A	466	470	Right-handed 310
Helix 16	16	A	504	522	Right-handed alpha
Helix 17	17	A	530	538	Right-handed alpha
Helix 18	18	A	551	559	Right-handed alpha
Helix 19	19	A	563	567	Right-handed 310
Helix 20	20	B	72	90	Right-handed alpha
Helix 21	21	B	104	112	Right-handed alpha
Helix 22	22	B	165	176	Right-handed alpha
Helix 23	23	B	223	229	Right-handed alpha
Helix 24	24	B	229	237	Right-handed alpha
Helix 25	25	B	237	261	Right-handed alpha
Helix 26	26	B	300	310	Right-handed alpha
Helix 27	27	B	346	366	Right-handed alpha
Helix 28	28	B	396	405	Right-handed alpha
Helix 29	29	B	410	414	Right-handed 310
Helix 30	30	B	416	430	Right-handed alpha
Helix 31	31	B	439	452	Right-handed alpha
Helix 32	32	B	453	456	Right-handed 310
Helix 33	33	B	466	470	Right-handed 310
Helix 34	34	B	504	521	Right-handed alpha
Helix 35	35	B	530	538	Right-handed alpha
Helix 36	36	B	551	559	Right-handed alpha
Helix 37	37	B	563	568	Right-handed 310
Helix 38	38	C	72	90	Right-handed alpha
Helix 39	39	C	104	113	Right-handed alpha
Helix 40	40	C	165	174	Right-handed alpha
Helix 41	41	C	222	229	Right-handed alpha
Helix 42	42	C	229	237	Right-handed alpha
Helix 43	43	C	237	261	Right-handed alpha
Helix 44	44	C	300	310	Right-handed alpha
Helix 45	45	C	346	367	Right-handed alpha
Helix 46	46	C	396	405	Right-handed alpha
Helix 47	47	C	410	414	Right-handed 310
Helix 48	48	C	416	431	Right-handed alpha
Helix 49	49	C	439	452	Right-handed alpha
Helix 50	50	C	453	456	Right-handed 310
Helix 51	51	C	466	470	Right-handed 310
Helix 52	52	C	504	521	Right-handed alpha
Helix 53	53	C	530	538	Right-handed alpha
Helix 54	54	C	551	559	Right-handed alpha
Helix 55	55	C	563	567	Right-handed 310
Helix 56	56	D	72	90	Right-handed alpha
Helix 57	57	D	104	112	Right-handed alpha
Helix 58	58	D	165	176	Right-handed alpha
Helix 59	59	D	222	229	Right-handed alpha
Helix 60	60	D	229	237	Right-handed alpha
Helix 61	61	D	237	261	Right-handed alpha
Helix 62	62	D	300	310	Right-handed alpha
Helix 63	63	D	346	367	Right-handed alpha
Helix 64	64	D	396	405	Right-handed alpha
Helix 65	65	D	410	414	Right-handed 310
Helix 66	66	D	416	430	Right-handed alpha
Helix 67	67	D	439	452	Right-handed alpha
Helix 68	68	D	453	456	Right-handed 310
Helix 69	69	D	466	470	Right-handed 310
Helix 70	70	D	504	521	Right-handed alpha
Helix 71	71	D	530	541	Right-handed alpha
Helix 72	72	D	551	559	Right-handed alpha
Helix 73	73	D	563	567	Right-handed 310

There are 16 sheets in PDB entry 3BJU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	137	first strand
Strand 2	A	142	149	anti-parallel
Strand 3	A	152	159	anti-parallel
Strand 4	A	196	207	parallel
Strand 5	A	181	190	anti-parallel
Strand 6	A	126	137	anti-parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	265	first strand
Strand 2	A	314	322	parallel
Strand 3	A	334	343	anti-parallel
Strand 4	A	544	550	anti-parallel
Strand 5	A	493	500	anti-parallel
Strand 6	A	485	490	anti-parallel
Strand 7	A	460	463	anti-parallel
Strand 8	A	392	395	parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	272	first strand
Strand 2	A	292	296	anti-parallel
Strand 3	A	284	287	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	373	first strand
Strand 2	A	383	386	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	137	first strand
Strand 2	B	142	149	anti-parallel
Strand 3	B	152	159	anti-parallel
Strand 4	B	196	207	parallel
Strand 5	B	181	190	anti-parallel
Strand 6	B	126	137	anti-parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	265	first strand
Strand 2	B	314	322	parallel
Strand 3	B	334	343	anti-parallel
Strand 4	B	544	550	anti-parallel
Strand 5	B	493	500	anti-parallel
Strand 6	B	485	490	anti-parallel
Strand 7	B	460	463	anti-parallel
Strand 8	B	392	395	parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	272	first strand
Strand 2	B	292	296	anti-parallel
Strand 3	B	284	287	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	373	first strand
Strand 2	B	383	386	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	137	first strand
Strand 2	C	142	149	anti-parallel
Strand 3	C	152	159	anti-parallel
Strand 4	C	196	207	parallel
Strand 5	C	181	190	anti-parallel
Strand 6	C	126	137	anti-parallel

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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	264	265	first strand
Strand 2	C	314	322	parallel
Strand 3	C	334	343	anti-parallel
Strand 4	C	544	550	anti-parallel
Strand 5	C	493	500	anti-parallel
Strand 6	C	485	490	anti-parallel
Strand 7	C	460	463	anti-parallel
Strand 8	C	392	395	parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	272	first strand
Strand 2	C	292	296	anti-parallel
Strand 3	C	284	287	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	370	373	first strand
Strand 2	C	383	386	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	137	first strand
Strand 2	D	142	149	anti-parallel
Strand 3	D	152	159	anti-parallel
Strand 4	D	196	207	parallel
Strand 5	D	181	190	anti-parallel
Strand 6	D	126	137	anti-parallel

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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	264	265	first strand
Strand 2	D	314	322	parallel
Strand 3	D	334	343	anti-parallel
Strand 4	D	544	550	anti-parallel
Strand 5	D	493	500	anti-parallel
Strand 6	D	485	490	anti-parallel
Strand 7	D	460	463	anti-parallel
Strand 8	D	392	395	parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	272	first strand
Strand 2	D	292	296	anti-parallel
Strand 3	D	284	287	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	370	373	first strand
Strand 2	D	383	386	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3BJU

Analysis of interatomic Contacts of Structural Units in PDB entry:
3BJU