Analysis of interatomic Contacts of Structural Units in PDB entry:
3BKW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BKW entry

There are 2 chains in PDB entry 3BKW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 24ARG 242
B
 GLY 24ARG 242
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3BKW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 28Right-handed 310
Helix 2
2
A
30 38Right-handed alpha
Helix 3
3
A
54 63Right-handed alpha
Helix 4
4
A
74 84Right-handed alpha
Helix 5
5
A
96 100Right-handed 310
Helix 6
6
A
115 119Right-handed 310
Helix 7
7
A
121 132Right-handed alpha
Helix 8
8
A
145 150Right-handed alpha
Helix 9
9
A
180 185Right-handed alpha
Helix 10
10
A
192 203Right-handed alpha
Helix 11
11
A
216 223Right-handed alpha
Helix 12
12
A
224 231Right-handed 310
Helix 13
13
B
30 38Right-handed alpha
Helix 14
14
B
54 63Right-handed alpha
Helix 15
15
B
74 84Right-handed alpha
Helix 16
16
B
96 100Right-handed 310
Helix 17
17
B
115 119Right-handed 310
Helix 18
18
B
121 132Right-handed alpha
Helix 19
19
B
145 150Right-handed alpha
Helix 20
20
B
180 185Right-handed alpha
Helix 21
21
B
192 203Right-handed alpha
Helix 22
22
B
216 223Right-handed alpha
Helix 23
23
B
224 231Right-handed 310
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There are 5 sheets in PDB entry 3BKW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 94first strand
Strand 2
A
67 72parallel
Strand 3
A
45 49parallel
Strand 4
A
107 113parallel
Strand 5
A
133 144parallel
Strand 6
A
235 241anti-parallel
Strand 7
A
206 212anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
164 168anti-parallel
Strand 3
B
166 168anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
188 190anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 94first strand
Strand 2
B
67 72parallel
Strand 3
B
45 49parallel
Strand 4
B
107 113parallel
Strand 5
B
133 144parallel
Strand 6
B
235 241anti-parallel
Strand 7
B
206 212anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 177first strand
Strand 2
B
188 190anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il