Analysis of interatomic Contacts of Structural Units in PDB entry:
3BM1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BM1 entry

There are 2 chains in PDB entry 3BM1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 183
B
 MET 1PHE 183
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3BM1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 10Right-handed alpha
Helix 2
2
A
22 34Right-handed alpha
Helix 3
3
A
52 70Right-handed alpha
Helix 4
4
A
72 82Right-handed alpha
Helix 5
5
A
83 86Right-handed 310
Helix 6
6
A
103 124Right-handed alpha
Helix 7
7
A
134 138Right-handed 310
Helix 8
8
A
139 146Right-handed alpha
Helix 9
9
A
176 178Right-handed 310
Helix 10
10
B
2 9Right-handed alpha
Helix 11
11
B
23 34Right-handed alpha
Helix 12
12
B
38 42Right-handed 310
Helix 13
13
B
53 69Right-handed alpha
Helix 14
14
B
72 82Right-handed alpha
Helix 15
15
B
83 86Right-handed 310
Helix 16
16
B
103 125Right-handed alpha
Helix 17
17
B
134 138Right-handed 310
Helix 18
18
B
139 146Right-handed alpha
Helix 19
19
B
176 178Right-handed 310
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There are 4 sheets in PDB entry 3BM1. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
153 163anti-parallel
Strand 3
A
128 132anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
153 163anti-parallel
Strand 3
A
88 94anti-parallel
Strand 4
A
46 51anti-parallel
Strand 5
B
180 182parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 182first strand
Strand 2
B
46 51parallel
Strand 3
B
88 94anti-parallel
Strand 4
B
153 163anti-parallel
Strand 5
B
16 17anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 182first strand
Strand 2
B
46 51parallel
Strand 3
B
88 94anti-parallel
Strand 4
B
153 163anti-parallel
Strand 5
B
128 132anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il