Analysis of interatomic Contacts of Structural Units in PDB entry:
3BM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BM5 entry

There are 2 chains in PDB entry 3BM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2HIS 339
B
 GLU 2ASN 336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 3BM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 21Right-handed 310
Helix 2
2
A
30 34Right-handed 310
Helix 3
3
A
50 52Right-handed 310
Helix 4
4
A
57 73Right-handed alpha
Helix 5
5
A
87 101Right-handed alpha
Helix 6
6
A
115 123Right-handed alpha
Helix 7
7
A
131 133Right-handed 310
Helix 8
8
A
134 150Right-handed alpha
Helix 9
9
A
162 180Right-handed alpha
Helix 10
10
A
194 208Right-handed alpha
Helix 11
11
A
222 226Right-handed 310
Helix 12
12
A
247 251Right-handed 310
Helix 13
13
A
258 274Right-handed alpha
Helix 14
14
A
278 294Right-handed alpha
Helix 15
15
A
295 298Right-handed 310
Helix 16
16
A
309 314Right-handed 310
Helix 17
17
A
326 335Right-handed alpha
Helix 18
18
B
16 21Right-handed 310
Helix 19
19
B
30 34Right-handed 310
Helix 20
20
B
50 52Right-handed 310
Helix 21
21
B
57 73Right-handed alpha
Helix 22
22
B
87 101Right-handed alpha
Helix 23
23
B
113 121Right-handed alpha
Helix 24
24
B
139 150Right-handed alpha
Helix 25
25
B
162 180Right-handed alpha
Helix 26
26
B
194 206Right-handed alpha
Helix 27
27
B
220 222Right-handed 310
Helix 28
28
B
247 251Right-handed 310
Helix 29
29
B
258 274Right-handed alpha
Helix 30
30
B
278 293Right-handed alpha
Helix 31
31
B
294 298Right-handed 310
Helix 32
32
B
309 314Right-handed 310
Helix 33
33
B
326 336Right-handed alpha
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There are 4 sheets in PDB entry 3BM5. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
B
26 28parallel
Strand 3
B
43 48anti-parallel
Strand 4
B
301 306parallel
Strand 5
B
184 190parallel
Strand 6
B
212 218parallel
Strand 7
B
253 257parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 257first strand
Strand 2
A
212 218parallel
Strand 3
A
186 190parallel
Strand 4
A
301 306parallel
Strand 5
A
43 48parallel
Strand 6
A
26 28anti-parallel
Strand 7
B
13 14parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 130first strand
Strand 2
A
104 109parallel
Strand 3
A
80 84parallel
Strand 4
A
154 156parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 130first strand
Strand 2
B
104 109parallel
Strand 3
B
80 84parallel
Strand 4
B
154 156parallel
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