Analysis of interatomic Contacts of Structural Units in PDB entry:
3BMZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BMZ entry

There are 2 chains in PDB entry 3BMZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5ALA 189
B
 GLU 5HIS 194
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 3BMZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 58Right-handed alpha
Helix 2
2
A
114 117Right-handed alpha
Helix 3
3
A
184 187Right-handed 310
Helix 4
4
B
55 58Right-handed alpha
Helix 5
5
B
114 117Right-handed alpha
Helix 6
6
B
184 187Right-handed 310
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There are 4 sheets in PDB entry 3BMZ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 97first strand
Strand 2
A
74 87anti-parallel
Strand 3
A
101 104anti-parallel
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There are 11 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 97first strand
Strand 2
A
74 87anti-parallel
Strand 3
A
60 69anti-parallel
Strand 4
A
43 49anti-parallel
Strand 5
A
31 38anti-parallel
Strand 6
A
12 22anti-parallel
Strand 7
A
168 173anti-parallel
Strand 8
A
157 164anti-parallel
Strand 9
A
144 151anti-parallel
Strand 10
A
131 140anti-parallel
Strand 11
A
121 128anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 97first strand
Strand 2
B
74 87anti-parallel
Strand 3
B
101 104anti-parallel
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There are 11 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 97first strand
Strand 2
B
74 87anti-parallel
Strand 3
B
61 69anti-parallel
Strand 4
B
43 49anti-parallel
Strand 5
B
31 38anti-parallel
Strand 6
B
12 22anti-parallel
Strand 7
B
168 173anti-parallel
Strand 8
B
157 164anti-parallel
Strand 9
B
144 151anti-parallel
Strand 10
B
131 140anti-parallel
Strand 11
B
121 128anti-parallel
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