Analysis of interatomic Contacts of Structural Units in PDB entry:
3BO9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BO9 entry

There are 2 chains in PDB entry 3BO9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0GLU 313
B
 HIS 0GLU 313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3BO9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 12Right-handed alpha
Helix 2
2
A
27 37Right-handed alpha
Helix 3
3
A
49 62Right-handed alpha
Helix 4
4
A
78 89Right-handed alpha
Helix 5
5
A
101 111Right-handed alpha
Helix 6
6
A
121 131Right-handed alpha
Helix 7
7
A
151 163Right-handed alpha
Helix 8
8
A
175 186Right-handed alpha
Helix 9
9
A
193 198Right-handed alpha
Helix 10
10
A
205 215Right-handed alpha
Helix 11
11
A
236 249Right-handed alpha
Helix 12
12
A
249 258Right-handed alpha
Helix 13
13
A
259 266Right-handed alpha
Helix 14
14
A
278 284Right-handed 310
Helix 15
15
A
289 312Right-handed alpha
Helix 16
16
B
5 12Right-handed alpha
Helix 17
17
B
27 38Right-handed alpha
Helix 18
18
B
49 62Right-handed alpha
Helix 19
19
B
78 89Right-handed alpha
Helix 20
20
B
101 111Right-handed alpha
Helix 21
21
B
121 131Right-handed alpha
Helix 22
22
B
151 163Right-handed alpha
Helix 23
23
B
175 186Right-handed alpha
Helix 24
24
B
193 198Right-handed alpha
Helix 25
25
B
205 215Right-handed alpha
Helix 26
26
B
236 249Right-handed alpha
Helix 27
27
B
249 258Right-handed alpha
Helix 28
28
B
259 268Right-handed alpha
Helix 29
29
B
278 284Right-handed 310
Helix 30
30
B
289 312Right-handed alpha
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There are 4 sheets in PDB entry 3BO9. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 19first strand
Strand 2
A
189 192parallel
Strand 3
A
167 170parallel
Strand 4
A
136 139parallel
Strand 5
A
114 119parallel
Strand 6
A
93 97parallel
Strand 7
A
68 73parallel
Strand 8
A
41 44parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
231 234anti-parallel
Strand 3
A
220 223anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 19first strand
Strand 2
B
189 192parallel
Strand 3
B
167 170parallel
Strand 4
B
136 139parallel
Strand 5
B
114 119parallel
Strand 6
B
93 97parallel
Strand 7
B
68 73parallel
Strand 8
B
41 44parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 146first strand
Strand 2
B
231 234anti-parallel
Strand 3
B
220 223anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il