Analysis of interatomic Contacts of Structural Units in PDB entry:
3BOD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BOD entry

There is 1 chain in PDB entry 3BOD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 81VAL 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There is 1 helix in PDB entry 3BOD. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
238 244Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3BOD. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 162first strand
Strand 2
A
147 153anti-parallel
Strand 3
A
138 144anti-parallel
Strand 4
A
124 131anti-parallel
Strand 5
A
210 215anti-parallel
Strand 6
A
86 99anti-parallel
Strand 7
A
226 233anti-parallel
Strand 8
A
236 237anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 197first strand
Strand 2
A
184 189anti-parallel
Strand 3
A
174 181anti-parallel
Strand 4
A
110 118anti-parallel
Strand 5
A
226 233anti-parallel
Strand 6
A
86 99anti-parallel
Strand 7
A
249 257anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il