Analysis of interatomic Contacts of Structural Units in PDB entry:
3BOF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BOF entry

There are 2 chains in PDB entry 3BOF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 560
B
 MET 1LEU 560
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 59 helices in PDB entry 3BOF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 14Right-handed alpha
Helix 2
2
A
22 27Right-handed alpha
Helix 3
3
A
28 30Right-handed 310
Helix 4
4
A
34 36Right-handed 310
Helix 5
5
A
37 42Right-handed alpha
Helix 6
6
A
42 55Right-handed alpha
Helix 7
7
A
69 74Right-handed alpha
Helix 8
8
A
75 77Right-handed 310
Helix 9
9
A
78 80Right-handed 310
Helix 10
10
A
81 98Right-handed alpha
Helix 11
11
A
120 138Right-handed alpha
Helix 12
12
A
150 165Right-handed alpha
Helix 13
13
A
187 197Right-handed alpha
Helix 14
14
A
210 224Right-handed alpha
Helix 15
15
A
250 256Right-handed alpha
Helix 16
16
A
257 264Right-handed alpha
Helix 17
17
A
276 288Right-handed alpha
Helix 18
18
A
327 336Right-handed alpha
Helix 19
19
A
339 352Right-handed alpha
Helix 20
20
A
363 367Right-handed 310
Helix 21
21
A
368 383Right-handed alpha
Helix 22
22
A
393 404Right-handed alpha
Helix 23
23
A
416 431Right-handed alpha
Helix 24
24
A
446 464Right-handed alpha
Helix 25
25
A
466 468Right-handed 310
Helix 26
26
A
478 482Right-handed 310
Helix 27
27
A
484 498Right-handed alpha
Helix 28
28
A
505 511Right-handed 310
Helix 29
29
A
515 530Right-handed alpha
Helix 30
30
A
541 555Right-handed alpha
Helix 31
31
B
3 14Right-handed alpha
Helix 32
32
B
22 29Right-handed alpha
Helix 33
33
B
34 36Right-handed 310
Helix 34
34
B
37 42Right-handed alpha
Helix 35
35
B
42 57Right-handed alpha
Helix 36
36
B
69 74Right-handed alpha
Helix 37
37
B
75 77Right-handed 310
Helix 38
38
B
78 80Right-handed 310
Helix 39
39
B
81 98Right-handed alpha
Helix 40
40
B
120 139Right-handed alpha
Helix 41
41
B
150 165Right-handed alpha
Helix 42
42
B
187 197Right-handed alpha
Helix 43
43
B
210 224Right-handed alpha
Helix 44
44
B
250 256Right-handed alpha
Helix 45
45
B
257 264Right-handed alpha
Helix 46
46
B
276 288Right-handed alpha
Helix 47
47
B
327 336Right-handed alpha
Helix 48
48
B
339 352Right-handed alpha
Helix 49
49
B
363 367Right-handed 310
Helix 50
50
B
368 383Right-handed alpha
Helix 51
51
B
393 404Right-handed alpha
Helix 52
52
B
416 431Right-handed alpha
Helix 53
53
B
446 464Right-handed alpha
Helix 54
54
B
466 468Right-handed 310
Helix 55
55
B
478 482Right-handed 310
Helix 56
56
B
484 498Right-handed alpha
Helix 57
57
B
505 511Right-handed 310
Helix 58
58
B
515 530Right-handed alpha
Helix 59
59
B
541 555Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 3BOF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
268 269parallel
Strand 3
A
228 232parallel
Strand 4
A
202 206parallel
Strand 5
A
170 174parallel
Strand 6
A
142 148parallel
Strand 7
A
101 106parallel
Strand 8
A
60 62parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 241first strand
Strand 2
A
244 246anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 304first strand
Strand 2
A
309 311anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 473first strand
Strand 2
A
433 437parallel
Strand 3
A
409 414parallel
Strand 4
A
387 390parallel
Strand 5
A
356 360parallel
Strand 6
A
316 322parallel
Strand 7
A
534 537parallel
Back to list of sheets
Back to top of page

There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 17first strand
Strand 2
B
268 269parallel
Strand 3
B
228 232parallel
Strand 4
B
202 206parallel
Strand 5
B
170 174parallel
Strand 6
B
143 148parallel
Strand 7
B
101 106parallel
Strand 8
B
60 62parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
302 304first strand
Strand 2
B
309 311anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
501 502first strand
Strand 2
B
470 473parallel
Strand 3
B
433 437parallel
Strand 4
B
409 414parallel
Strand 5
B
387 390parallel
Strand 6
B
356 360parallel
Strand 7
B
316 322parallel
Strand 8
B
534 537parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il