Analysis of interatomic Contacts of Structural Units in PDB entry:
3BOP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BOP entry

There are 3 chains in PDB entry 3BOP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 86VAL 260
B
 THR 87VAL 260
C
 ALA 86VAL 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 3BOP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
239 246Right-handed alpha
Helix 2
2
B
239 246Right-handed alpha
Helix 3
3
C
239 246Right-handed alpha
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There are 7 sheets in PDB entry 3BOP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 259first strand
Strand 2
A
88 91anti-parallel
Strand 3
A
228 235anti-parallel
Strand 4
A
114 120anti-parallel
Strand 5
A
176 183anti-parallel
Strand 6
A
186 191anti-parallel
Strand 7
A
194 198anti-parallel
Strand 8
C
194 198anti-parallel
Strand 9
C
187 191anti-parallel
Strand 10
C
175 182anti-parallel
Strand 11
C
113 121anti-parallel
Strand 12
C
234 235anti-parallel
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There are 14 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 259first strand
Strand 2
A
88 91anti-parallel
Strand 3
A
228 235anti-parallel
Strand 4
A
114 120anti-parallel
Strand 5
A
176 183anti-parallel
Strand 6
A
186 191anti-parallel
Strand 7
A
194 198anti-parallel
Strand 8
C
194 198anti-parallel
Strand 9
C
187 191anti-parallel
Strand 10
C
175 182anti-parallel
Strand 11
C
113 121anti-parallel
Strand 12
C
228 230anti-parallel
Strand 13
C
88 91anti-parallel
Strand 14
C
257 260anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 165first strand
Strand 2
A
149 156anti-parallel
Strand 3
A
139 146anti-parallel
Strand 4
A
126 133anti-parallel
Strand 5
A
212 218anti-parallel
Strand 6
A
97 101anti-parallel
Strand 7
A
251 254anti-parallel
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There are 11 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 169first strand
Strand 2
B
149 156anti-parallel
Strand 3
B
139 146anti-parallel
Strand 4
B
126 133anti-parallel
Strand 5
B
212 218anti-parallel
Strand 6
B
88 101anti-parallel
Strand 7
B
228 235anti-parallel
Strand 8
B
114 120anti-parallel
Strand 9
B
176 183anti-parallel
Strand 10
B
186 191anti-parallel
Strand 11
B
194 198anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 169first strand
Strand 2
B
149 156anti-parallel
Strand 3
B
139 146anti-parallel
Strand 4
B
126 133anti-parallel
Strand 5
B
212 218anti-parallel
Strand 6
B
88 101anti-parallel
Strand 7
B
251 259anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
159 165first strand
Strand 2
C
149 156anti-parallel
Strand 3
C
141 146anti-parallel
Strand 4
C
126 133anti-parallel
Strand 5
C
212 218anti-parallel
Strand 6
C
97 101anti-parallel
Strand 7
C
251 254anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
220 221first strand
Strand 2
C
224 225anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il