Analysis of interatomic Contacts of Structural Units in PDB entry:
3BP6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BP6 entry

There are 2 chains in PDB entry 3BP6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1THR 112
B
 MET 19PRO 209
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 3BP6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
81 85Right-handed 310
Helix 2
2
B
77 82Right-handed 310
Helix 3
3
B
93 97Right-handed 310
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There are 7 sheets in PDB entry 3BP6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
17 23anti-parallel
Strand 3
A
72 77anti-parallel
Strand 4
A
62 66anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
107 112parallel
Strand 3
A
86 94anti-parallel
Strand 4
A
31 37anti-parallel
Strand 5
A
43 50anti-parallel
Strand 6
A
53 56anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
107 112parallel
Strand 3
A
86 94anti-parallel
Strand 4
A
100 103anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 24first strand
Strand 2
B
38 44anti-parallel
Strand 3
B
84 89anti-parallel
Strand 4
B
74 75anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 33first strand
Strand 2
B
109 120parallel
Strand 3
B
98 106anti-parallel
Strand 4
B
55 61anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 132first strand
Strand 2
B
139 147anti-parallel
Strand 3
B
174 182anti-parallel
Strand 4
B
163 168anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 155first strand
Strand 2
B
190 196anti-parallel
Strand 3
B
201 207anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il