Analysis of interatomic Contacts of Structural Units in PDB entry:
3BP8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BP8 entry

There are 4 chains in PDB entry 3BP8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 11GLY 406
B
 GLN 12GLY 406
C
 MET 13ARG 87
D
 MET 13ARG 87
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 3BP8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 28Right-handed alpha
Helix 2
2
A
32 40Right-handed alpha
Helix 3
3
A
43 57Right-handed alpha
Helix 4
4
A
123 139Right-handed alpha
Helix 5
5
A
180 185Right-handed alpha
Helix 6
6
A
195 206Right-handed alpha
Helix 7
7
A
244 248Right-handed 310
Helix 8
8
A
270 280Right-handed alpha
Helix 9
9
A
296 307Right-handed alpha
Helix 10
10
A
308 334Right-handed alpha
Helix 11
11
A
342 346Right-handed 310
Helix 12
12
A
347 363Right-handed alpha
Helix 13
13
A
364 369Right-handed alpha
Helix 14
14
A
382 385Right-handed 310
Helix 15
15
A
386 396Right-handed alpha
Helix 16
16
A
399 404Right-handed alpha
Helix 17
17
B
12 25Right-handed alpha
Helix 18
18
B
32 40Right-handed alpha
Helix 19
19
B
48 56Right-handed alpha
Helix 20
20
B
124 139Right-handed alpha
Helix 21
21
B
177 185Right-handed alpha
Helix 22
22
B
194 206Right-handed alpha
Helix 23
23
B
244 248Right-handed 310
Helix 24
24
B
264 269Right-handed alpha
Helix 25
25
B
270 283Right-handed alpha
Helix 26
26
B
296 305Right-handed alpha
Helix 27
27
B
308 334Right-handed alpha
Helix 28
28
B
342 348Right-handed 310
Helix 29
29
B
351 362Right-handed alpha
Helix 30
30
B
364 369Right-handed alpha
Helix 31
31
B
387 396Right-handed alpha
Helix 32
32
B
397 405Right-handed alpha
Helix 33
33
C
13 21Right-handed alpha
Helix 34
34
C
43 47Right-handed 310
Helix 35
35
C
48 56Right-handed alpha
Helix 36
36
C
74 86Right-handed alpha
Helix 37
37
D
18 22Right-handed 310
Helix 38
38
D
43 47Right-handed 310
Helix 39
39
D
48 54Right-handed alpha
Helix 40
40
D
73 85Right-handed alpha
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There are 9 sheets in PDB entry 3BP8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
78 80anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 115first strand
Strand 2
A
96 103anti-parallel
Strand 3
A
85 92anti-parallel
Strand 4
A
145 153parallel
Strand 5
A
190 194parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
163 166anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 234first strand
Strand 2
A
224 230anti-parallel
Strand 3
A
215 220anti-parallel
Strand 4
A
337 341parallel
Strand 5
A
373 375parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 62first strand
Strand 2
B
78 80anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 111first strand
Strand 2
B
97 102anti-parallel
Strand 3
B
86 92anti-parallel
Strand 4
B
146 152parallel
Strand 5
B
190 193parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 234first strand
Strand 2
B
224 230anti-parallel
Strand 3
B
215 220anti-parallel
Strand 4
B
337 341parallel
Strand 5
B
373 375parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 30first strand
Strand 2
C
37 41anti-parallel
Strand 3
C
66 69anti-parallel
Strand 4
C
60 63anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
27 29first strand
Strand 2
D
38 41anti-parallel
Strand 3
D
66 69anti-parallel
Strand 4
D
60 63anti-parallel
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