Analysis of interatomic Contacts of Structural Units in PDB entry:
3BPB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3BPB entry

There are 2 chains in PDB entry 3BPB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 254
B
 MET 1PHE 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 3BPB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 17Right-handed 310
Helix 2
2
A
27 43Right-handed alpha
Helix 3
3
A
58 63Right-handed 310
Helix 4
4
A
82 87Right-handed alpha
Helix 5
5
A
88 90Right-handed 310
Helix 6
6
A
92 100Right-handed alpha
Helix 7
7
A
114 116Right-handed 310
Helix 8
8
A
134 148Right-handed alpha
Helix 9
9
A
162 165Right-handed 310
Helix 10
10
A
180 188Right-handed 310
Helix 11
11
A
196 204Right-handed 310
Helix 12
12
A
218 228Right-handed alpha
Helix 13
13
A
237 242Right-handed alpha
Helix 14
14
B
11 17Right-handed 310
Helix 15
15
B
27 43Right-handed alpha
Helix 16
16
B
58 63Right-handed 310
Helix 17
17
B
82 87Right-handed alpha
Helix 18
18
B
87 100Right-handed alpha
Helix 19
19
B
114 116Right-handed 310
Helix 20
20
B
134 148Right-handed alpha
Helix 21
21
B
162 165Right-handed 310
Helix 22
22
B
180 188Right-handed 310
Helix 23
23
B
196 204Right-handed 310
Helix 24
24
B
218 228Right-handed alpha
Helix 25
25
B
237 242Right-handed alpha
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There are 9 sheets in PDB entry 3BPB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 254first strand
Strand 2
A
4 8anti-parallel
Strand 3
A
48 52parallel
Strand 4
B
48 52anti-parallel
Strand 5
B
4 8parallel
Strand 6
B
252 254anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 70first strand
Strand 2
A
75 77anti-parallel
Strand 3
A
104 106parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 121first strand
Strand 2
A
124 128anti-parallel
Strand 3
A
154 155parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 169first strand
Strand 2
A
174 178anti-parallel
Strand 3
A
191 195parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 208first strand
Strand 2
A
211 215anti-parallel
Strand 3
A
231 235parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 70first strand
Strand 2
B
75 77anti-parallel
Strand 3
B
104 106parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 121first strand
Strand 2
B
124 128anti-parallel
Strand 3
B
154 155parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 169first strand
Strand 2
B
174 178anti-parallel
Strand 3
B
191 195parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 208first strand
Strand 2
B
211 215anti-parallel
Strand 3
B
231 235parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il